RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 FAM50BQ9Y247 325 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 EPN1Q9Y6I3 576 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-209ENST00000553949 SOBPA7XYQ1 873 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 EIF3CLB5ME19 914 aaKnown RBP12.82□□□□□ -0.36
SHMT2-209ENST00000553949 ZNF263O14978 683 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 TLR5O60602 858 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 GRAP2O75791 330 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 NDUFA10O95299 355 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 OAS1P00973 400 aaKnown RBP12.82□□□□□ -0.36
SHMT2-209ENST00000553949 LTFP02788 710 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 FYNP06241 537 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 PTMAP06454 111 aaKnown RBP12.82□□□□□ -0.36
SHMT2-209ENST00000553949 PFKLP17858 780 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 ABCB4P21439 1286 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 GALCP54803 685 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 SPA17Q15506 151 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 AAK1Q2M2I8 961 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 FAM102AQ5T9C2 384 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-209ENST00000553949 DNAJC24Q6P3W2 148 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 BEND5Q7L4P6 421 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 TADA2BQ86TJ2 420 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 ZNF276Q8N554 614 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 CCDC112Q8NEF3 446 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 EDEM1Q92611 657 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 KHSRPQ92945 711 aaKnown RBP eCLIP12.82□□□□□ -0.36
SHMT2-209ENST00000553949 ZNF653Q96CK0 615 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 ZSWIM3Q96MP5 696 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 MYADMQ96S97 322 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 PPP1R9BQ96SB3 815 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 EIF3CQ99613 913 aaKnown RBP12.82□□□□□ -0.36
SHMT2-209ENST00000553949 TRIM62Q9BVG3 475 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 SLITRK6Q9H5Y7 841 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 POPDC2Q9HBU9 364 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 GDE1Q9NZC3 331 aa12.82□□□□□ -0.36
SHMT2-209ENST00000553949 CNOT8Q9UFF9 292 aaKnown RBP12.82□□□□□ -0.36
SHMT2-209ENST00000553949 BRWD1Q9NSI6 2320 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 TRAV19A0A0A6YYK7 116 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 TCRBV5S1A1TA0A578 114 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 ANKRD62A6NC57 917 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 ATMINO43313 823 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-209ENST00000553949 COCHO43405 550 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 OLFM2O95897 454 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 TBX18O95935 607 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 H2AFZP0C0S5 128 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 KRT3P12035 628 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 NCAM1P13591 858 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 IL9P15248 144 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 HDCP19113 662 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 GBP2P32456 591 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-209ENST00000553949 RNASE9P60153 205 aaKnown RBP12.81□□□□□ -0.36
SHMT2-209ENST00000553949 MAMLD1Q13495 774 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 C10orf120Q5SQS8 335 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 C10orf76Q5T2E6 689 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 PLEKHA7Q6IQ23 1121 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 KLHDC10Q6PID8 442 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 H2AFVQ71UI9 128 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 RSRC2Q7L4I2 434 aaKnown RBP12.81□□□□□ -0.36
SHMT2-209ENST00000553949 ARCQ7LC44 396 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 OTOP3Q7RTS5 596 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 CMTM8Q8IZV2 173 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 RNF139Q8WU17 664 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 SLC2A13Q96QE2 648 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 SLC22A12Q96S37 553 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 CYP2S1Q96SQ9 504 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 CDK5RAP1Q96SZ6 601 aaKnown RBP12.81□□□□□ -0.36
SHMT2-209ENST00000553949 SELENOOQ9BVL4 669 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 PHF7Q9BWX1 381 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-209ENST00000553949 PACSIN1Q9BY11 444 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 NACA2Q9H009 215 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 RNF38Q9H0F5 515 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 THAP2Q9H0W7 228 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 METTL5Q9NRN9 209 aaKnown RBP12.81□□□□□ -0.36
SHMT2-209ENST00000553949 PARVAQ9NVD7 372 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 TMEM59LQ9UK28 342 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 NUDT5Q9UKK9 219 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 NAALADL1Q9UQQ1 740 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 USTQ9Y2C2 406 aa12.81□□□□□ -0.36
SHMT2-209ENST00000553949 ZFP37Q9Y6Q3 630 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-209ENST00000553949 GREB1Q4ZG55 1949 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 MYH10P35580 1976 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 NOTCH4Q99466 2003 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 SIGLEC16A6NMB1 481 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 CAPN9O14815 690 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 MDM4O15151 490 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 ARHGAP6O43182 974 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 NRDCO43847 1150 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 DAB1O75553 588 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 IPO7O95373 1038 aaKnown RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 GJB6O95452 261 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 CYP1A2P05177 515 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 CKMP06732 381 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 TMEM253P0C7T8 217 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 SP100P23497 879 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 ATP5C1P36542 298 aaKnown RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 AVPR1AP37288 418 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 MAGEA1P43355 309 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 KCNQ1P51787 676 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 GPC5P78333 572 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 SLC7A9P82251 487 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 CCZ1BP86790 482 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms