RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 BYSLQ13895 437 aaKnown RBP13.45□□□□□ -0.26
LINC00643-202ENST00000553426 SF3A2Q15428 464 aaKnown RBP13.45□□□□□ -0.26
LINC00643-202ENST00000553426 CCDC6Q16204 474 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 PPM1JQ5JR12 505 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 BBS7Q8IWZ6 715 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 NAT16Q8N8M0 369 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 IL17RCQ8NAC3 791 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 FBXL13Q8NEE6 735 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 WHAMMQ8TF30 809 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 HEXIM2Q96MH2 286 aaKnown RBP13.45□□□□□ -0.26
LINC00643-202ENST00000553426 XPO6Q96QU8 1125 aaKnown RBP13.45□□□□□ -0.26
LINC00643-202ENST00000553426 CDK5RAP1Q96SZ6 601 aaKnown RBP13.45□□□□□ -0.26
LINC00643-202ENST00000553426 GTPBP4Q9BZE4 634 aaKnown RBP13.45□□□□□ -0.26
LINC00643-202ENST00000553426 TPSD1Q9BZJ3 242 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 GOLPH3LQ9H4A5 285 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 APOBEC3GQ9HC16 384 aaKnown RBP13.45□□□□□ -0.26
LINC00643-202ENST00000553426 CYLDQ9NQC7 956 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 DNMT3LQ9UJW3 386 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 CIZ1Q9ULV3 898 aaPredicted RBP13.45□□□□□ -0.26
LINC00643-202ENST00000553426 SPAG17Q6Q759 2223 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 CYP26A1O43174 497 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 HOXC11O43248 304 aaPredicted RBP13.44□□□□□ -0.26
LINC00643-202ENST00000553426 MAP3K13O43283 966 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 TULP3O75386 442 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 CAVIN2O95810 425 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 RALAP11233 206 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 KCNA4P22459 653 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 PLA2G4AP47712 749 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 PLA2G2CQ5R387 149 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 C10orf120Q5SQS8 335 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 TCERG1LQ5VWI1 586 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 SDE2Q6IQ49 451 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 KLHDC10Q6PID8 442 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 HTR3DQ70Z44 454 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 RASSF3Q86WH2 238 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 C12orf40Q86WS4 652 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 PGBD3Q8N328 593 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 ZNF513Q8N8E2 541 aaPredicted RBP13.44□□□□□ -0.26
LINC00643-202ENST00000553426 TWNKQ96RR1 684 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 DUSP16Q9BY84 665 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 FAM124BQ9H5Z6 455 aaPredicted RBP13.44□□□□□ -0.26
LINC00643-202ENST00000553426 GDPD2Q9HCC8 539 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 RAB20Q9NX57 234 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 WDR35Q9P2L0 1181 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 NAGPAQ9UK23 515 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 INVSQ9Y283 1065 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 GTF3C3Q9Y5Q9 886 aa13.44□□□□□ -0.26
LINC00643-202ENST00000553426 TPRP12270 2363 aaKnown RBP13.44□□□□□ -0.26
LINC00643-202ENST00000553426 MYH10P35580 1976 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 A0A1W2PQH9 124 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 BCLAF3A2AJT9 711 aaKnown RBP13.43□□□□□ -0.26
LINC00643-202ENST00000553426 SGK1O00141 431 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 TBX18O95935 607 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 RARGP13631 454 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 KIF11P52732 1056 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 PNOCQ13519 176 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 ZCWPW2Q504Y3 356 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 ZNF394Q53GI3 561 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 C10orf76Q5T2E6 689 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 STPG1Q5TH74 334 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 PMS2CLQ68D20 193 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 RNF43Q68DV7 783 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 GRAMD4Q6IC98 578 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 TMEM92Q6UXU6 159 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 GPRIN1Q7Z2K8 1008 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 CYP2U1Q7Z449 544 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 TMEM25Q86YD3 366 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 ETFBKMTQ8IXQ9 262 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 SMYD4Q8IYR2 804 aaPredicted RBP13.43□□□□□ -0.26
LINC00643-202ENST00000553426 MDGA1Q8NFP4 955 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 GSDMAQ96QA5 445 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 BBS2Q9BXC9 721 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 KLF16Q9BXK1 252 aaPredicted RBP13.43□□□□□ -0.26
LINC00643-202ENST00000553426 DNAJC17Q9NVM6 304 aaKnown RBP13.43□□□□□ -0.26
LINC00643-202ENST00000553426 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.43□□□□□ -0.26
LINC00643-202ENST00000553426 ZNF510Q9Y2H8 683 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 SPTBN2O15020 2390 aa13.43□□□□□ -0.26
LINC00643-202ENST00000553426 HHLA1C9JL84 531 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 NEDD8-MDP1E9PL57 170 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 SLC16A3O15427 465 aaKnown RBP13.42□□□□□ -0.26
LINC00643-202ENST00000553426 ADRB1P08588 477 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 TYRP14679 529 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 KIR2DL1P43626 348 aaPredicted RBP13.42□□□□□ -0.26
LINC00643-202ENST00000553426 DHPSP49366 369 aaPredicted RBP13.42□□□□□ -0.26
LINC00643-202ENST00000553426 YWHAEP62258 255 aaKnown RBP13.42□□□□□ -0.26
LINC00643-202ENST00000553426 NUCB2P80303 420 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 COG7P83436 770 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 FKBP3Q00688 224 aaKnown RBP13.42□□□□□ -0.26
LINC00643-202ENST00000553426 STIM1Q13586 685 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 DCAF17Q5H9S7 520 aaPredicted RBP13.42□□□□□ -0.26
LINC00643-202ENST00000553426 PPP1R26Q5T8A7 1209 aaPredicted RBP13.42□□□□□ -0.26
LINC00643-202ENST00000553426 ZNF658Q5TYW1 1059 aaPredicted RBP13.42□□□□□ -0.26
LINC00643-202ENST00000553426 EMC10Q5UCC4 262 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 TPGS1Q6ZTW0 290 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 LPCAT2Q7L5N7 544 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 CCDC186Q7Z3E2 898 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 ARHGAP18Q8N392 663 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 ZNF276Q8N554 614 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 TERB1Q8NA31 727 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 HMGB4Q8WW32 186 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms