RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 XYLT2Q9H1B5 865 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ASCC2Q9H1I8 757 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 DHX33Q9H6R0 707 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 RPAP3Q9H6T3 665 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 USP29Q9HBJ7 922 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 POPDC2Q9HBU9 364 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 DDX43Q9NXZ2 648 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 SIRPGQ9P1W8 387 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 KCNG1Q9UIX4 513 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 PCDHGC3Q9UN70 934 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 PLLPQ9Y342 182 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 PPME1Q9Y570 386 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MYO18AQ92614 2054 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 BRWD3Q6RI45 1802 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ANK1P16157 1881 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 LCTP09848 1927 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 RLFQ13129 1914 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MAGEA13PA6NCF6 341 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 APOC4-APOC2K7ER74 178 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 VWA5AO00534 786 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 MAP3K7O43318 606 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 BUD23O43709 281 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 RNASEH1O60930 286 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 STAM2O75886 525 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TM7SF2O76062 418 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 LDHAP00338 332 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 GSRP00390 522 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 APOC2P02655 101 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 LYNP07948 512 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 SUPT20HL2P0C7V6 817 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CSH1P0DML2 217 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CSH2P0DML3 217 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 EIF4BP23588 611 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CPOXP36551 454 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 NAMPTP43490 491 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 ALDH18A1P54886 795 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 AQP5P55064 265 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 ACTR3P61158 418 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 PSMC1P62191 440 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TMPRSS15P98073 1019 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CAPSQ13938 189 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 SUPT20HL1Q3ZLR7 823 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 XKR3Q5GH77 459 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TRMT10BQ6PF06 316 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 RAPH1Q70E73 1250 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CAND1Q86VP6 1230 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 XYLT1Q86Y38 959 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 SCUBE1Q8IWY4 988 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 ARHGAP24Q8N264 748 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TTLL6Q8N841 843 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 KCTD6Q8NC69 237 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CCDC110Q8TBZ0 833 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 ZFAND2BQ8WV99 257 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 PIWIL1Q96J94 861 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF778Q96MU6 729 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TWNKQ96RR1 684 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TTC1Q99614 292 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CALN1Q9BXU9 219 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF518BQ9C0D4 1074 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 PCMTD2Q9NV79 361 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 KCNK4Q9NYG8 393 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 HMGXB4Q9UGU5 601 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 A0A088AWK7 358 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 F8W8V4 182 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 PIK3R2O00459 728 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 MCF2LO15068 1137 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 MAFGO15525 162 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TRUB2O95900 331 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 EGFRP00533 1210 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 KRT7P08729 469 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 C6orf222P0C671 652 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CD19P15391 556 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 STIP1P31948 543 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 PDE1BQ01064 536 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CDC16Q13042 620 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TUBB3Q13509 450 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 NOMO1Q15155 1222 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TTC39BQ5VTQ0 682 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 SLFN12LQ6IEE8 588 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 DARS2Q6PI48 645 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 C1orf228Q6PIY5 440 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 MTHFD1LQ6UB35 978 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 SLC26A11Q86WA9 606 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 CDR2LQ86X02 465 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 THNSL1Q8IYQ7 743 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 ADGRF2Q8IZF7 708 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 UNC5BQ8IZJ1 945 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 MPP5Q8N3R9 675 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 GSTCDQ8NEC7 633 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 REPS2Q8NFH8 660 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 LPAR1Q92633 364 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 KCNN1Q92952 543 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 AZIN2Q96A70 460 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 E2F7Q96AV8 911 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 FAF2Q96CS3 445 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 FGD4Q96M96 766 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 C7orf26Q96N11 449 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TRAPPC9Q96Q05 1148 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 ECSITQ9BQ95 431 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 SDCBP2Q9H190 292 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms