RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CTSSP25774 331 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 EEF1GP26641 437 aaKnown RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 GYG1P46976 350 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 HSPA7P48741 367 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 ALDH9A1P49189 494 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 FKBP1AP62942 108 aaKnown RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 CD83Q01151 205 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 FMO1Q01740 532 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 DSC2Q02487 901 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 ICAM4Q14773 271 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 KLHDC7AQ5VTJ3 777 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 FAAH2Q6GMR7 532 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 PDZD4Q76G19 769 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 PALM2Q8IXS6 379 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 LGI4Q8N135 537 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 MPP5Q8N3R9 675 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 PCSK9Q8NBP7 692 aaKnown RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 UBE2Q2Q8WVN8 375 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 ARNTL2Q8WYA1 636 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 RMDN1Q96DB5 314 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 EDC3Q96F86 508 aaKnown RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 RMDN3Q96TC7 470 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 TTLL2Q9BWV7 592 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 EIF2AQ9BY44 585 aaKnown RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 ATP6V0A4Q9HBG4 840 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 CPNE7Q9UBL6 633 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 DBF4Q9UBU7 674 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 ZFP69BQ9UJL9 534 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 FBXO10Q9UK96 956 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 ITGB1BP2Q9UKP3 347 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 AGTPBP1Q9UPW5 1226 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 SLC45A1Q9Y2W3 748 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 LRRFIP2Q9Y608 721 aaKnown RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 SPEF2Q9C093 1822 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 FAM186AA6NE01 2351 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 GBF1Q92538 1859 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 RPAP1Q9BWH6 1393 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 MAP1BP46821 2468 aaKnown RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 RRN3P2A6NIE6 340 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 CYSRT1A8MQ03 144 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 PODXLO00592 558 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 TEX33O43247 280 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 B4GALT3O60512 393 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 LPXNO60711 386 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 CYP7B1O75881 506 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SEC24DO94855 1032 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 THP07101 528 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 DHRS4L1P0CG22 281 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 MYL4P12829 197 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 XBP1P17861 261 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 MALP21145 153 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 KCNA5P22460 613 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 CYP2C18P33260 490 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 PTPN7P35236 360 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 KRT9P35527 623 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 RGS2P41220 211 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 MEOX1P50221 254 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 HMGCS2P54868 508 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 VCPP55072 806 aaKnown RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SOX8P57073 446 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 NKX6-1P78426 367 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 IL13RA1P78552 427 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 MXRA7P84157 204 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 PPP3CAQ08209 521 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SPP2Q13103 211 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 RAB32Q13637 225 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 HABP2Q14520 560 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 RAB30Q15771 203 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 ZACNQ401N2 412 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 FLYWCH1Q4VC44 716 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 MFSD5Q6N075 450 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 GLB1LQ6UWU2 654 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 RNF44Q7L0R7 432 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 CXXC5Q7LFL8 322 aaKnown RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 GPR142Q7Z601 462 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 FAM83AQ86UY5 434 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 MIB1Q86YT6 1006 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SCYL3Q8IZE3 742 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 ADSSL1Q8N142 457 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 Q8N1X5 172 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 AOPEPQ8N6M6 819 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 ATP11CQ8NB49 1132 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 OR2I1PQ8NGU4 316 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SNX33Q8WV41 574 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 FAM151AQ8WW52 585 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 TBC1D20Q96BZ9 403 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SEC62Q99442 399 aaKnown RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 PDCD2LQ9BRP1 358 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 FAM167BQ9BTA0 163 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 COLEC11Q9BWP8 271 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SSBP3Q9BWW4 388 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 ANKRD2Q9GZV1 360 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SMC4Q9NTJ3 1288 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-208ENST00000551691 MUTYHQ9UIF7 546 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SCOCQ9UIL1 159 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 FAM184BQ9ULE4 1060 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 SLC39A10Q9ULF5 831 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms