RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SMAD2Q15796 467 aaKnown RBP22.21■■□□□ 1.15
VPS29-206ENST00000549578 HECTD3Q5T447 861 aa22.21■■□□□ 1.15
VPS29-206ENST00000549578 BTBD8Q5XKL5 378 aa22.21■■□□□ 1.15
VPS29-206ENST00000549578 GOLGA1Q92805 767 aa22.21■■□□□ 1.15
VPS29-206ENST00000549578 KHSRPQ92945 711 aaKnown RBP eCLIP22.21■■□□□ 1.156e-11■□□□□ 11.2
VPS29-206ENST00000549578 ZNF653Q96CK0 615 aa22.21■■□□□ 1.15
VPS29-206ENST00000549578 VCPIP1Q96JH7 1222 aa22.21■■□□□ 1.15
VPS29-206ENST00000549578 SLC22A12Q96S37 553 aa22.21■■□□□ 1.15
VPS29-206ENST00000549578 SLC46A2Q9BY10 475 aa22.21■■□□□ 1.15
VPS29-206ENST00000549578 TASP1Q9H6P5 420 aa22.21■■□□□ 1.15
VPS29-206ENST00000549578 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.21■■□□□ 1.15
VPS29-206ENST00000549578 CLIC5Q9NZA1 410 aa22.21■■□□□ 1.15
VPS29-206ENST00000549578 DOCK8Q8NF50 2099 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 TBX18O95935 607 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 OAS1P00973 400 aaKnown RBP22.2■■□□□ 1.14
VPS29-206ENST00000549578 FYNP06241 537 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 GBP2P32456 591 aaPredicted RBP22.2■■□□□ 1.14
VPS29-206ENST00000549578 GSCP56915 257 aaPredicted RBP22.2■■□□□ 1.14
VPS29-206ENST00000549578 RNASE9P60153 205 aaKnown RBP22.2■■□□□ 1.14
VPS29-206ENST00000549578 YWHAZP63104 245 aaKnown RBP22.2■■□□□ 1.14
VPS29-206ENST00000549578 EFHC1Q5JVL4 640 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 SLC26A9Q7LBE3 791 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 CYP2S1Q96SQ9 504 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 PACSIN1Q9BY11 444 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 THAP2Q9H0W7 228 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 METTL5Q9NRN9 209 aaKnown RBP22.2■■□□□ 1.14
VPS29-206ENST00000549578 WDR35Q9P2L0 1181 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 CDH7Q9ULB5 785 aa22.2■■□□□ 1.14
VPS29-206ENST00000549578 EPN1Q9Y6I3 576 aaPredicted RBP22.2■■□□□ 1.14
VPS29-206ENST00000549578 COCHO43405 550 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 HSF2BPO75031 334 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 NDUFA10O95299 355 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 RALAP11233 206 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 GALCP54803 685 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 PUS10Q3MIT2 529 aaKnown RBP22.19■■□□□ 1.14
VPS29-206ENST00000549578 ARL14EPQ8N8R7 260 aaPredicted RBP22.19■■□□□ 1.14
VPS29-206ENST00000549578 C3orf20Q8ND61 904 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 RNF38Q9H0F5 515 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 POPDC2Q9HBU9 364 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 ABCC13Q9NSE7 274 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.19■■□□□ 1.14
VPS29-206ENST00000549578 CNOT8Q9UFF9 292 aaKnown RBP22.19■■□□□ 1.14
VPS29-206ENST00000549578 NAALADL1Q9UQQ1 740 aa22.19■■□□□ 1.14
VPS29-206ENST00000549578 TCRBV5S1A1TA0A578 114 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 MDM4O15151 490 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 LCA5LO95447 670 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 GLI1P08151 1106 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 NCAM1P13591 858 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 DDX6P26196 483 aaKnown RBP eCLIP22.18■■□□□ 1.14
VPS29-206ENST00000549578 SCNN1AP37088 669 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 TUBP50607 506 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 CCDC173Q0VFZ6 552 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 C10orf120Q5SQS8 335 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 DNAJC24Q6P3W2 148 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 RSRC2Q7L4I2 434 aaKnown RBP22.18■■□□□ 1.14
VPS29-206ENST00000549578 CCDC112Q8NEF3 446 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 TRIM11Q96F44 468 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 PHF7Q9BWX1 381 aaPredicted RBP22.18■■□□□ 1.14
VPS29-206ENST00000549578 NACA2Q9H009 215 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 SMG9Q9H0W8 520 aaKnown RBP22.18■■□□□ 1.14
VPS29-206ENST00000549578 ASNSD1Q9NWL6 643 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 MYO1AQ9UBC5 1043 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 FAM50BQ9Y247 325 aa22.18■■□□□ 1.14
VPS29-206ENST00000549578 TRAV19A0A0A6YYK7 116 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 EIF3CLB5ME19 914 aaKnown RBP22.17■■□□□ 1.14
VPS29-206ENST00000549578 CAPN9O14815 690 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 CKMP06732 381 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 HDCP19113 662 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 CCZ1BP86790 482 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 CCZ1P86791 482 aaPredicted RBP22.17■■□□□ 1.14
VPS29-206ENST00000549578 SYPL2Q5VXT5 272 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 CMTM8Q8IZV2 173 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 DEFB106AQ8N104 65 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 ST13P5Q8NFI4 369 aaPredicted RBP22.17■■□□□ 1.14
VPS29-206ENST00000549578 ZSCAN18Q8TBC5 510 aaPredicted RBP22.17■■□□□ 1.14
VPS29-206ENST00000549578 RNF139Q8WU17 664 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 SLC2A13Q96QE2 648 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 EIF3CQ99613 913 aaKnown RBP22.17■■□□□ 1.14
VPS29-206ENST00000549578 SELENOOQ9BVL4 669 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 GDE1Q9NZC3 331 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 TMEM59LQ9UK28 342 aa22.17■■□□□ 1.14
VPS29-206ENST00000549578 ANKRD62A6NC57 917 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 DAB1O75553 588 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 OLFM2O95897 454 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 H2AFZP0C0S5 128 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 MYBL1P10243 752 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 KRT3P12035 628 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 FLT3P36888 993 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 EFEMP1Q12805 493 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 SPA17Q15506 151 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 AAK1Q2M2I8 961 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 DCAF6Q58WW2 860 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 TRNP1Q6NT89 227 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 H2AFVQ71UI9 128 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 OTOP3Q7RTS5 596 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 EMC1Q8N766 993 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 JOSD2Q8TAC2 188 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 ARHGEF26Q96DR7 871 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 RPGRIP1Q96KN7 1286 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 PPP1R9BQ96SB3 815 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms