RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 MARCH9Q86YJ5 346 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 GLIS3Q8NEA6 775 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 ADAM32Q8TC27 787 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 SETD7Q8WTS6 366 aaKnown RBP13.54□□□□□ -0.24
SCAF11-208ENST00000546534 FOXJ1Q92949 421 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 MRGPRX1Q96LB2 322 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 MMS19Q96T76 1030 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 GABRG3Q99928 467 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 MRPL45Q9BRJ2 306 aaKnown RBP13.54□□□□□ -0.24
SCAF11-208ENST00000546534 ZDHHC5Q9C0B5 715 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 ZNF518BQ9C0D4 1074 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 IL21RQ9HBE5 538 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 KIAA1522Q9P206 1035 aaPredicted RBP13.54□□□□□ -0.24
SCAF11-208ENST00000546534 DKK4Q9UBT3 224 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 SEL1LQ9UBV2 794 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 CHORDC1Q9UHD1 332 aaPredicted RBP13.54□□□□□ -0.24
SCAF11-208ENST00000546534 SH3BP1Q9Y3L3 701 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 RAD54BQ9Y620 910 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 PRRT4C9JH25 899 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 CLDN5O00501 218 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 GCNT3O95395 438 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 PTPN1P18031 435 aaKnown RBP13.53□□□□□ -0.24
SCAF11-208ENST00000546534 GNL1P36915 607 aaPredicted RBP13.53□□□□□ -0.24
SCAF11-208ENST00000546534 CYP4F3Q08477 520 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 HECTD3Q5T447 861 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 KIAA1324Q6UXG2 1013 aaKnown RBP13.53□□□□□ -0.24
SCAF11-208ENST00000546534 SYCP3Q8IZU3 236 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 NUP93Q8N1F7 819 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 PDZD8Q8NEN9 1154 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 DNASE2BQ8WZ79 361 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 FBXO32Q969P5 355 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 CRELD1Q96HD1 420 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 ELOVL4Q9GZR5 314 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 SNX25Q9H3E2 840 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 CCSER2Q9H7U1 834 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 DNAJC17Q9NVM6 304 aaKnown RBP13.53□□□□□ -0.24
SCAF11-208ENST00000546534 TOR4AQ9NXH8 423 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 CACNA2D2Q9NY47 1150 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 KIF3AQ9Y496 699 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 CELSR3Q9NYQ7 3312 aa13.53□□□□□ -0.24
SCAF11-208ENST00000546534 HELZ2Q9BYK8 2649 aaKnown RBP13.52□□□□□ -0.24
SCAF11-208ENST00000546534 A0A1B0GTW7 788 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 WASH3PC4AMC7 463 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 RTN3O95197 1032 aaPredicted RBP13.52□□□□□ -0.25
SCAF11-208ENST00000546534 TNNC2P02585 160 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 ATXN1LP0C7T5 689 aaKnown RBP13.52□□□□□ -0.25
SCAF11-208ENST00000546534 IRF1P10914 325 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 GAP43P17677 238 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 CD6P30203 668 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 DUOXA2Q1HG44 320 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 TSR1Q2NL82 804 aaKnown RBP13.52□□□□□ -0.25
SCAF11-208ENST00000546534 USP49Q70CQ1 688 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 GPD1LQ8N335 351 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 OR6B3Q8NGW1 331 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 BAHD1Q8TBE0 780 aaPredicted RBP13.52□□□□□ -0.25
SCAF11-208ENST00000546534 OVCA2Q8WZ82 227 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 DNAJC19Q96DA6 116 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 EPSTI1Q96J88 318 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 DUSP9Q99956 384 aaKnown RBP13.52□□□□□ -0.25
SCAF11-208ENST00000546534 B3GNT5Q9BYG0 378 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 FGFBP2Q9BYJ0 223 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 TRIM9Q9C026 710 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 DPEP3Q9H4B8 488 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 GAREM1Q9H706 876 aa13.52□□□□□ -0.25
SCAF11-208ENST00000546534 TRABD2BA6NFA1 517 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 MEI4A8MW99 385 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 NEDD8-MDP1E9PL57 170 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 GPR37O15354 613 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 CACNG3O60359 315 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 CILPO75339 1184 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 TACC1O75410 805 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 DKK1O94907 266 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 PRB1P04280 392 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 BNC1Q01954 994 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 SNX30Q5VWJ9 437 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 ZCCHC9Q8N567 271 aaKnown RBP13.51□□□□□ -0.25
SCAF11-208ENST00000546534 SCAMP5Q8TAC9 235 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 SCFD1Q8WVM8 642 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 TOE1Q96GM8 510 aaKnown RBP13.51□□□□□ -0.25
SCAF11-208ENST00000546534 KCNK16Q96T55 309 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 GPR174Q9BXC1 333 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 BBS2Q9BXC9 721 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 MIR1-1HGQ9H1L0 117 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 PRDM16Q9HAZ2 1276 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 OLFML3Q9NRN5 406 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 TM7SF3Q9NS93 570 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 WSB2Q9NYS7 404 aaPredicted RBP13.51□□□□□ -0.25
SCAF11-208ENST00000546534 FNDC3AQ9Y2H6 1198 aaKnown RBP13.51□□□□□ -0.25
SCAF11-208ENST00000546534 NFE2L3Q9Y4A8 694 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 URB1O60287 2271 aaKnown RBP13.51□□□□□ -0.25
SCAF11-208ENST00000546534 PTPRBP23467 1997 aa13.51□□□□□ -0.25
SCAF11-208ENST00000546534 ASXL3Q9C0F0 2248 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 A0A087WV48 116 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 ZNF233A6NK53 670 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 GOLGA8CPA6NN73 597 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 H3BQV1 296 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 GFRA2O00451 464 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 GREM1O60565 184 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 PRPF6O94906 941 aaKnown RBP13.5□□□□□ -0.25
SCAF11-208ENST00000546534 CST3P01034 146 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms