RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	CHORDC1	Q9UHD1	332 aa	Predicted RBP	12.45	□□□□□ -0.42
DDB1-223	ENST00000543658	DENND4A	Q7Z401	1863 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	NOTCH4	Q99466	2003 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	FAM92A	A1XBS5	289 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	TMEM110-MUSTN1	A8MSY1	372 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	BUB1	O43683	1085 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	GABBR2	O75899	941 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	RNF8	O76064	485 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	GJB6	O95452	261 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	GLP2R	O95838	553 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	RHO	P08100	348 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	RARG	P13631	454 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	PDGFRA	P16234	1089 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	PSMA2	P25787	234 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	NOS2	P35228	1153 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	MATK	P42679	507 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	SULT1E1	P49888	294 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	ITIH3	Q06033	890 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	KCNC3	Q14003	757 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	DCAF6	Q58WW2	860 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	ARC	Q7LC44	396 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	GRASP	Q7Z6J2	395 aa	Predicted RBP	12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	HS6ST3	Q8IZP7	471 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	DEFB106A	Q8N104	65 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	C12orf76	Q8N812	135 aa	Predicted RBP	12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	VN1R2	Q8NFZ6	395 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	EDEM1	Q92611	657 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	PABPC5	Q96DU9	382 aa	Known RBP	12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	PIWIL1	Q96J94	861 aa	Known RBP	12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	SLITRK6	Q9H5Y7	841 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	ZNF334	Q9HCZ1	680 aa	Predicted RBP	12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	OSGEP	Q9NPF4	335 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	HCFC1R1	Q9NWW0	138 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	CLIC5	Q9NZA1	410 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	IP6K2	Q9UHH9	426 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	TFR2	Q9UP52	801 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658	TRANK1	O15050	2925 aa		12.44	□□□□□ -0.42
DDB1-223	ENST00000543658		A0A1W2PRU2	124 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	TLR5	O60602	858 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	DDX6	P26196	483 aa	Known RBP eCLIP	12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	GBP1	P32455	592 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	ARHGAP25	P42331	645 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	SSR1	P43307	286 aa	Known RBP	12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	PIGH	Q14442	188 aa	Predicted RBP	12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	MESD	Q14696	234 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	CCDC85B	Q15834	202 aa	Predicted RBP	12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	CDO1	Q16878	200 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	C10orf120	Q5SQS8	335 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	HECTD3	Q5T447	861 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	ZNF662	Q6ZS27	426 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	HFE2	Q6ZVN8	426 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	SND1	Q7KZF4	910 aa	Known RBP eCLIP	12.43	□□□□□ -0.42	8e-7	■■■□□ 15
DDB1-223	ENST00000543658	BEND5	Q7L4P6	421 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	TMC8	Q8IU68	726 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	SYCE1	Q8N0S2	351 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	CCAR2	Q8N163	923 aa	Known RBP	12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	RNF10	Q8N5U6	811 aa	Known RBP	12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	EMC1	Q8N766	993 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	JOSD2	Q8TAC2	188 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	FNIP1	Q8TF40	1166 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	RXFP2	Q8WXD0	754 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	PPM1E	Q8WY54	764 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	RIPOR3	Q96MK2	946 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	SERPINB11	Q96P15	392 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	SLC2A13	Q96QE2	648 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	NCAPG	Q9BPX3	1015 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	LACRT	Q9GZZ8	138 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	FAM204A	Q9H8W3	233 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	NMUR1	Q9HB89	426 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	DNMT3B	Q9UBC3	853 aa	Known RBP	12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	RASAL2	Q9UJF2	1139 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	TMEM59L	Q9UK28	342 aa		12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	MRPS23	Q9Y3D9	190 aa	Known RBP	12.43	□□□□□ -0.42
DDB1-223	ENST00000543658	LAMA3	Q16787	3333 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	CLUH	O75153	1309 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	SYNJ2BP-COX16	A0A087WUM0	186 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	TCRBV5S1A1T	A0A578	114 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	ZNF840P	A6NDX5	716 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	RCCD1	A6NED2	376 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	TMEM191C	A6NGB0	347 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	KIF5C	O60282	957 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	TBX10	O75333	385 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	MTA2	O94776	668 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	MOCS3	O95396	460 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	F11	P03951	625 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	RFC1	P35251	1148 aa	Predicted RBP	12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	ATP5C1	P36542	298 aa	Known RBP	12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	FLT3	P36888	993 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	MTHFR	P42898	656 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	TUB	P50607	506 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	ZNF143	P52747	638 aa	Predicted RBP	12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	HADHB	P55084	474 aa	Known RBP	12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	RPL7A	P62424	266 aa	Known RBP	12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	CYP4F8	P98187	520 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	ATP11A	P98196	1134 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	DEUP1	Q05D60	604 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	TAF5	Q15542	800 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	ATAT1	Q5SQI0	421 aa		12.42	□□□□□ -0.42
DDB1-223	ENST00000543658	PPP1R15B	Q5SWA1	713 aa		12.42	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms