RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 HTR3DQ70Z44 454 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 TTC30AQ86WT1 665 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 BBS7Q8IWZ6 715 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 CCDC33Q8N5R6 958 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 ALLCQ8N6M5 410 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 TXNDC5Q8NBS9 432 aaKnown RBP13.84□□□□□ -0.19
RTN3-213ENST00000543552 FBXL13Q8NEE6 735 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 JAKMIP2Q96AA8 810 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 CHAMP1Q96JM3 812 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 XPO6Q96QU8 1125 aaKnown RBP13.84□□□□□ -0.19
RTN3-213ENST00000543552 GOLPH3LQ9H4A5 285 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 APOBEC3GQ9HC16 384 aaKnown RBP13.84□□□□□ -0.19
RTN3-213ENST00000543552 BCCIPQ9P287 314 aaKnown RBP eCLIP13.84□□□□□ -0.19
RTN3-213ENST00000543552 WDR35Q9P2L0 1181 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 EML5Q05BV3 1969 aa13.83□□□□□ -0.19
RTN3-213ENST00000543552 SLC16A3O15427 465 aaKnown RBP13.83□□□□□ -0.2
RTN3-213ENST00000543552 ZBTB24O43167 697 aaPredicted RBP13.83□□□□□ -0.2
RTN3-213ENST00000543552 CYP26A1O43174 497 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 GDF9O60383 454 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 TULP3O75386 442 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 RALAP11233 206 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 CCDC6Q16204 474 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 C10orf120Q5SQS8 335 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 PMS2CLQ68D20 193 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 CCDC186Q7Z3E2 898 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 C12orf40Q86WS4 652 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 ETFBKMTQ8IXQ9 262 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 ARHGAP18Q8N392 663 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 TERB1Q8NA31 727 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 IL17RCQ8NAC3 791 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 MDGA1Q8NFP4 955 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 GSDMAQ96QA5 445 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 TWNKQ96RR1 684 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 DUSP16Q9BY84 665 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 TPSD1Q9BZJ3 242 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 RAB20Q9NX57 234 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 DNMT3LQ9UJW3 386 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 NAGPAQ9UK23 515 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 SDK1Q7Z5N4 2213 aa13.83□□□□□ -0.2
RTN3-213ENST00000543552 BCLAF3A2AJT9 711 aaKnown RBP13.82□□□□□ -0.2
RTN3-213ENST00000543552 DCLK1O15075 740 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 CAVIN2O95810 425 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 RARGP13631 454 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 DPP6P42658 865 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 KIR2DL1P43626 348 aaPredicted RBP13.82□□□□□ -0.2
RTN3-213ENST00000543552 PLA2G4AP47712 749 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 KIF11P52732 1056 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 MCCD1P59942 119 aaPredicted RBP13.82□□□□□ -0.2
RTN3-213ENST00000543552 YWHAEP62258 255 aaKnown RBP13.82□□□□□ -0.2
RTN3-213ENST00000543552 COBLL1Q53SF7 1204 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 C10orf76Q5T2E6 689 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 STPG1Q5TH74 334 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 GRAMD4Q6IC98 578 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 SDE2Q6IQ49 451 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 GPRIN1Q7Z2K8 1008 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 CYP2U1Q7Z449 544 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 PHTF2Q8N3S3 785 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 ZNF276Q8N554 614 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 ZNF513Q8N8E2 541 aaPredicted RBP13.82□□□□□ -0.2
RTN3-213ENST00000543552 NAT16Q8N8M0 369 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 HEXIM2Q96MH2 286 aaKnown RBP13.82□□□□□ -0.2
RTN3-213ENST00000543552 BBS2Q9BXC9 721 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 KLF16Q9BXK1 252 aaPredicted RBP13.82□□□□□ -0.2
RTN3-213ENST00000543552 GDPD2Q9HCC8 539 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 CISHQ9NSE2 258 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 DNAJC17Q9NVM6 304 aaKnown RBP13.82□□□□□ -0.2
RTN3-213ENST00000543552 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.82□□□□□ -0.2
RTN3-213ENST00000543552 CLIC5Q9NZA1 410 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 MARK1Q9P0L2 795 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 CIZ1Q9ULV3 898 aaPredicted RBP13.82□□□□□ -0.2
RTN3-213ENST00000543552 ZNF510Q9Y2H8 683 aa13.82□□□□□ -0.2
RTN3-213ENST00000543552 A0A1W2PQH9 124 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 HHLA1C9JL84 531 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 NEDD8-MDP1E9PL57 170 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 SGK1O00141 431 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 MAP3K13O43283 966 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 CACNG3O60359 315 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 ADRB1P08588 477 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 KCNA4P22459 653 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 NUCB2P80303 420 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 FKBP3Q00688 224 aaKnown RBP13.81□□□□□ -0.2
RTN3-213ENST00000543552 LRRC63Q05C16 580 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 PNOCQ13519 176 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 STIM1Q13586 685 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 DCAF17Q5H9S7 520 aaPredicted RBP13.81□□□□□ -0.2
RTN3-213ENST00000543552 SPDYCQ5MJ68 293 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 ZNF658Q5TYW1 1059 aaPredicted RBP13.81□□□□□ -0.2
RTN3-213ENST00000543552 TCERG1LQ5VWI1 586 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 RNF43Q68DV7 783 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 TMEM92Q6UXU6 159 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 LPCAT2Q7L5N7 544 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 TMEM25Q86YD3 366 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 SMYD4Q8IYR2 804 aaPredicted RBP13.81□□□□□ -0.2
RTN3-213ENST00000543552 FMR1NBQ8N0W7 255 aaPredicted RBP13.81□□□□□ -0.2
RTN3-213ENST00000543552 PGBD3Q8N328 593 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 OLIG1Q8TAK6 271 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 TMEM176AQ96HP8 235 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 UBXN6Q9BZV1 441 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 DCLK3Q9C098 648 aa13.81□□□□□ -0.2
RTN3-213ENST00000543552 TCRBV21S2A2A0A5A6 115 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms