RNA–Protein interactions for RNA: ENST00000543162.1

DDB1-221, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-221ENST00000543162 TLR10Q9BXR5 811 aa11.16□□□□□ -0.62
DDB1-221ENST00000543162 PLEKHA4Q9H4M7 779 aa11.16□□□□□ -0.62
DDB1-221ENST00000543162 TLE6Q9H808 572 aa11.16□□□□□ -0.62
DDB1-221ENST00000543162 RRAGDQ9NQL2 400 aaPredicted RBP11.16□□□□□ -0.62
DDB1-221ENST00000543162 TLR8Q9NR97 1041 aaKnown RBP11.16□□□□□ -0.62
DDB1-221ENST00000543162 ABCC13Q9NSE7 274 aa11.16□□□□□ -0.62
DDB1-221ENST00000543162 RRN3Q9NYV6 651 aa11.16□□□□□ -0.62
DDB1-221ENST00000543162 DPP7Q9UHL4 492 aa11.16□□□□□ -0.62
DDB1-221ENST00000543162 PACSIN2Q9UNF0 486 aaPredicted RBP11.16□□□□□ -0.62
DDB1-221ENST00000543162 NAALADL1Q9UQQ1 740 aa11.16□□□□□ -0.62
DDB1-221ENST00000543162 ASB3Q9Y575 518 aa11.16□□□□□ -0.62
DDB1-221ENST00000543162 ZNF638Q14966 1978 aaKnown RBP11.16□□□□□ -0.62
DDB1-221ENST00000543162 CCDC66A2RUB6 948 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 RFXAPO00287 272 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 PER2O15055 1255 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 LRCH4O75427 683 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 EPCAMP16422 314 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 HMGA1P17096 107 aaKnown RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 PSEN1P49768 467 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 SULT1E1P49888 294 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 HADHQ16836 314 aaKnown RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 LRIT3Q3SXY7 679 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 PPM1LQ5SGD2 360 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 DAB2IPQ5VWQ8 1189 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 SYPL2Q5VXT5 272 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 PAPD7Q5XG87 772 aaKnown RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 RSRC2Q7L4I2 434 aaKnown RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 DNAJB7Q7Z6W7 309 aaPredicted RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 ADGRD2Q7Z7M1 963 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 RBM23Q86U06 439 aaKnown RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 RHOT1Q8IXI2 618 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 ELMOD1Q8N336 334 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 PDZD8Q8NEN9 1154 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 RNF139Q8WU17 664 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 FAM172AQ8WUF8 416 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 HDAC7Q8WUI4 952 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 OVCA2Q8WZ82 227 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 CD101Q93033 1021 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 PPP2R3CQ969Q6 453 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 PSMG2Q969U7 264 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 MRPL38Q96DV4 380 aaKnown RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 TRMT2BQ96GJ1 504 aaKnown RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 HES6Q96HZ4 224 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 MYRFLQ96LU7 910 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 ZNF512Q96ME7 567 aaPredicted RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 TBCBQ99426 244 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 NPY6RQ99463 290 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 ZNF576Q9H609 170 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 NMUR1Q9HB89 426 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 MAN1C1Q9NR34 630 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 UXTQ9UBK9 157 aaPredicted RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 SNX12Q9UMY4 172 aa11.15□□□□□ -0.62
DDB1-221ENST00000543162 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.15□□□□□ -0.62
DDB1-221ENST00000543162 TNRC18O15417 2968 aaPredicted RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 MTCL1Q9Y4B5 1905 aaKnown RBP11.15□□□□□ -0.62
DDB1-221ENST00000543162 COL4A4P53420 1690 aaPredicted RBP11.14□□□□□ -0.63
DDB1-221ENST00000543162 SPDYE4A6NLX3 237 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 M0QYT0 321 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 PSTPIP1O43586 416 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 ZMYND10O75800 440 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 URI1O94763 535 aaPredicted RBP11.14□□□□□ -0.63
DDB1-221ENST00000543162 RALAP11233 206 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 TCP1P17987 556 aaKnown RBP11.14□□□□□ -0.63
DDB1-221ENST00000543162 TFE3P19532 575 aaPredicted RBP11.14□□□□□ -0.63
DDB1-221ENST00000543162 CTNNA2P26232 953 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 MIPP30301 263 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 CTNNA1P35221 906 aaKnown RBP11.14□□□□□ -0.63
DDB1-221ENST00000543162 PCK1P35558 622 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 GJC1P36383 396 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 NRIP1P48552 1158 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 PGFP49763 221 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 TAS2R40P59535 323 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 DUSP6Q16828 381 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 SH3PXD2AQ5TCZ1 1133 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 LRRC38Q5VT99 294 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 SCYL2Q6P3W7 929 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 STRADAQ7RTN6 431 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 ARFGAP1Q8N6T3 406 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 CENPIQ92674 756 aaPredicted RBP11.14□□□□□ -0.63
DDB1-221ENST00000543162 KRT35Q92764 455 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 NT5C3BQ969T7 300 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 PSMB7Q99436 277 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 FAM204AQ9H8W3 233 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 OSER1Q9NX31 292 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 CLIC5Q9NZA1 410 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 TRPM5Q9NZQ8 1165 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 COLQQ9Y215 455 aaPredicted RBP11.14□□□□□ -0.63
DDB1-221ENST00000543162 PCDHA3Q9Y5H8 950 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 HCFC2Q9Y5Z7 792 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 SAR1BQ9Y6B6 198 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 MYO9BQ13459 2157 aa11.14□□□□□ -0.63
DDB1-221ENST00000543162 CHD9Q3L8U1 2897 aa11.13□□□□□ -0.63
DDB1-221ENST00000543162 SYNJ2BP-COX16A0A087WUM0 186 aa11.13□□□□□ -0.63
DDB1-221ENST00000543162 KCNK3O14649 394 aa11.13□□□□□ -0.63
DDB1-221ENST00000543162 CCL16O15467 120 aa11.13□□□□□ -0.63
DDB1-221ENST00000543162 DDX3YO15523 660 aaKnown RBP11.13□□□□□ -0.63
DDB1-221ENST00000543162 PRPSAP2O60256 369 aa11.13□□□□□ -0.63
DDB1-221ENST00000543162 TRUB2O95900 331 aaKnown RBP11.13□□□□□ -0.63
DDB1-221ENST00000543162 F9P00740 461 aa11.13□□□□□ -0.63
DDB1-221ENST00000543162 KRT7P08729 469 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms