RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 TYROBPO43914 113 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 CSDE1O75534 798 aaKnown RBP10.26□□□□□ -0.77
SS18-205ENST00000542420 FBXO21O94952 628 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 ITGBL1O95965 494 aaPredicted RBP10.26□□□□□ -0.77
SS18-205ENST00000542420 CD48P09326 243 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 ALADP13716 330 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 IL4RP24394 825 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 GNL1P36915 607 aaPredicted RBP10.26□□□□□ -0.77
SS18-205ENST00000542420 DYNLT1P63172 113 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 SPATA21Q7Z572 469 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 PALM2Q8IXS6 379 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 PQLC3Q8N755 202 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 OR6B3Q8NGW1 331 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 ACSF2Q96CM8 615 aaPredicted RBP10.26□□□□□ -0.77
SS18-205ENST00000542420 TGS1Q96RS0 853 aaKnown RBP10.26□□□□□ -0.77
SS18-205ENST00000542420 SLC9A7Q96T83 725 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 OSMRQ99650 979 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 APBA2Q99767 749 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 PTPN18Q99952 460 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 DNAJC17Q9NVM6 304 aaKnown RBP10.26□□□□□ -0.77
SS18-205ENST00000542420 MKS1Q9NXB0 559 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 TUBGCP4Q9UGJ1 667 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 TEX264Q9Y6I9 313 aa10.26□□□□□ -0.77
SS18-205ENST00000542420 TCP11X1B4DZS4 312 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 H0YHG0 523 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 HUS1O60921 280 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 RASSF9O75901 435 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 TMEM63AO94886 807 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 MLNP12872 115 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 KRT15P19012 456 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 SCTRP47872 440 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 HDAC4P56524 1084 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 ORC1Q13415 861 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 BIRC2Q13490 618 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 DBN1Q16643 649 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 SLC45A4Q5BKX6 768 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 ZNF449Q6P9G9 518 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 FAM71DQ8N9W8 422 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 FBXO36Q8NEA4 188 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 MZB1Q8WU39 189 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 NT5C3BQ969T7 300 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 PWWP2AQ96N64 755 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 QKIQ96PU8 341 aaKnown RBP eCLIP10.25□□□□□ -0.771e-6■■■■■ 30.7
SS18-205ENST00000542420 FERMT1Q9BQL6 677 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 NRDE2Q9H7Z3 1164 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 XAB2Q9HCS7 855 aaKnown RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 EIF2B3Q9NR50 452 aaKnown RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.25□□□□□ -0.77
SS18-205ENST00000542420 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 C9IYK1 514 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 H7C0C1 242 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 ADCY6O43306 1168 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 ATP5HO75947 161 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 ZBED1O96006 694 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 TAC1P20366 129 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 PAX7P23759 505 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 L1CAMP32004 1257 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 FDFT1P37268 417 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 MATKP42679 507 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 MSH2P43246 934 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 MAGEA3P43357 314 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 ATP5OP48047 213 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 GJA9P57773 515 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 NAB1Q13506 487 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 MPP2Q14168 576 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 C15orf59Q2T9L4 293 aaPredicted RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 GALNTL6Q49A17 601 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 PREPLQ4J6C6 727 aaPredicted RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 FNBP1LQ5T0N5 605 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 ANKRD22Q5VYY1 191 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 CCNJLQ8IV13 435 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 SCML4Q8N228 414 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 C12orf29Q8N999 325 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 PCDH19Q8TAB3 1148 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 MAGEC3Q8TD91 643 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 SLC44A1Q8WWI5 657 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 C18orf25Q96B23 403 aaPredicted RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 ELAC2Q9BQ52 826 aaKnown RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 DUSP16Q9BY84 665 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 FAM49AQ9H0Q0 323 aaPredicted RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 VPS11Q9H270 941 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 NXF3Q9H4D5 531 aaKnown RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 NGRNQ9NPE2 291 aaKnown RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 PIN4Q9Y237 131 aaKnown RBP10.25□□□□□ -0.77
SS18-205ENST00000542420 NME7Q9Y5B8 376 aa10.25□□□□□ -0.77
SS18-205ENST00000542420 GABRDO14764 452 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 PRKCHP24723 683 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 NOS2P35228 1153 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 VASPP50552 380 aaPredicted RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 SARNPP82979 210 aaKnown RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 SLC18A2Q05940 514 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 FASTKD3Q14CZ7 662 aaKnown RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 KCTD19Q17RG1 926 aaPredicted RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 SLC25A52Q3SY17 297 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 WLSQ5T9L3 541 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 LGSNQ5TDP6 509 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 NUGGCQ68CJ6 796 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 NAIF1Q69YI7 327 aaPredicted RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 C3orf62Q6ZUJ4 267 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 PRUNE1Q86TP1 453 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms