RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 ZNF362Q5T0B9 420 aaPredicted RBP3.79□□□□□ -1.8
USP28-210ENST00000542033 L1TD1Q5T7N2 865 aaKnown RBP3.79□□□□□ -1.8
USP28-210ENST00000542033 FAXCQ5TGI0 409 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 MANEALQ5VSG8 457 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 DENND2CQ68D51 928 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 CEP85Q6P2H3 762 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 MTHFD1LQ6UB35 978 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 CRTC1Q6UUV9 634 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 CLEC9AQ6UXN8 241 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 DPY19L3Q6ZPD9 716 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 AMIGO2Q86SJ2 522 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 CPXCR1Q8N123 301 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 FSTL5Q8N475 847 aaPredicted RBP3.79□□□□□ -1.8
USP28-210ENST00000542033 FAM98AQ8NCA5 519 aaKnown RBP3.79□□□□□ -1.8
USP28-210ENST00000542033 NGDNQ8NEJ9 315 aaKnown RBP3.79□□□□□ -1.8
USP28-210ENST00000542033 SARAFQ96BY9 339 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 SGCZQ96LD1 299 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 FAM227BQ96M60 508 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 FSD1LQ9BXM9 530 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.79□□□□□ -1.8
USP28-210ENST00000542033 TRIM36Q9NQ86 728 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 TMOD4Q9NZQ9 345 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 NKX1-2Q9UD57 310 aaPredicted RBP3.79□□□□□ -1.8
USP28-210ENST00000542033 STEAP1Q9UHE8 339 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 ANAPC4Q9UJX5 808 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 AMFRQ9UKV5 643 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 NAP1L2Q9ULW6 460 aaPredicted RBP3.79□□□□□ -1.8
USP28-210ENST00000542033 GABRQQ9UN88 632 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 ADAMTS5Q9UNA0 930 aa3.79□□□□□ -1.8
USP28-210ENST00000542033 FANCIQ9NVI1 1328 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 F5H423 210 aaPredicted RBP3.78□□□□□ -1.8
USP28-210ENST00000542033 M0R3H8 397 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 PMPCBO75439 489 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 TJP3O95049 919 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 NDST3O95803 873 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 CREB1P16220 341 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 PTMSP20962 102 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 MCCP23508 829 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 EEF1GP26641 437 aaKnown RBP3.78□□□□□ -1.8
USP28-210ENST00000542033 RBL1P28749 1068 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 CTGFP29279 349 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 HALP42357 657 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 PTH2RP49190 550 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 PPM1FP49593 454 aaPredicted RBP3.78□□□□□ -1.8
USP28-210ENST00000542033 NHLH1Q02575 133 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 GPS1Q13098 491 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 PDCD2Q16342 344 aaPredicted RBP3.78□□□□□ -1.8
USP28-210ENST00000542033 ST3GAL2Q16842 350 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 SLC35G1Q2M3R5 365 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 DGKKQ5KSL6 1271 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 MRNIPQ6NTE8 343 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 NAPRTQ6XQN6 538 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 PTF1AQ7RTS3 328 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 ZNF354CQ86Y25 554 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 KRT73Q86Y46 540 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 C11orf44Q8N8P7 122 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 ZNF384Q8TF68 577 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 ABHD5Q8WTS1 349 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 KIAA1191Q96A73 305 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 ZDHHC12Q96GR4 267 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 VPS50Q96JG6 964 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 SCLT1Q96NL6 688 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 PRR25Q96S07 402 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.78□□□□□ -1.8
USP28-210ENST00000542033 PRDM13Q9H4Q3 707 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 SNX15Q9NRS6 342 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 TFCP2L1Q9NZI6 479 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 SH3BP4Q9P0V3 963 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 FNIP2Q9P278 1114 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 ARPP21Q9UBL0 812 aaPredicted RBP3.78□□□□□ -1.8
USP28-210ENST00000542033 RIMKLBQ9ULI2 386 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 LRCH1Q9Y2L9 728 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 PCDHGB2Q9Y5G2 931 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 NISCHQ9Y2I1 1504 aa3.78□□□□□ -1.8
USP28-210ENST00000542033 A0A087WZ62 844 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 FAM234BA2RU67 622 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 AGPSO00116 658 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 MASP2O00187 686 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 PODXLO00592 558 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 HNRNPDLO14979 420 aaKnown RBP3.77□□□□□ -1.81
USP28-210ENST00000542033 KCNQ3O43525 872 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 JTBO76095 146 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 PDE8BO95263 885 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 PTMAP06454 111 aaKnown RBP3.77□□□□□ -1.81
USP28-210ENST00000542033 MYCLP12524 364 aaPredicted RBP3.77□□□□□ -1.81
USP28-210ENST00000542033 ABCB4P21439 1286 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 ITPKBP27987 946 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 HSPA7P48741 367 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 MRPS21P82921 87 aaKnown RBP3.77□□□□□ -1.81
USP28-210ENST00000542033 CYP1B1Q16678 543 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 CCDC142Q17RM4 750 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.77□□□□□ -1.81
USP28-210ENST00000542033 SUMO4Q6EEV6 95 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 PTCHD4Q6ZW05 846 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 CCDC28AQ8IWP9 274 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 FTSJ3Q8IY81 847 aaKnown RBP3.77□□□□□ -1.81
USP28-210ENST00000542033 SYTL1Q8IYJ3 562 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 MBD3L2Q8NHZ7 208 aaPredicted RBP3.77□□□□□ -1.81
USP28-210ENST00000542033 POF1BQ8WVV4 589 aa3.77□□□□□ -1.81
USP28-210ENST00000542033 DAZAP1Q96EP5 407 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms