RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TFAP2AP05549 437 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 KRT7P08729 469 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 MRPS22P82650 360 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 HSF5Q4G112 596 aaPredicted RBP13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 PAOXQ6QHF9 649 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 CEP170P1Q96L14 293 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 MFSD14AQ96MC6 490 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 MRPS26Q9BYN8 205 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 UGT1A7Q9HAW7 530 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 UGT1A10Q9HAW8 530 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 UGT1A8Q9HAW9 530 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 NOP56O00567 594 aaKnown RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 SIN3BO75182 1162 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 TRMUO75648 421 aaKnown RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 BPGMP07738 259 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 CDK4P11802 303 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 AOC1P19801 751 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 CRKP46108 304 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 OGDHQ02218 1023 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 MYLK3Q32MK0 819 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 LRRC38Q5VT99 294 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 SIAH1Q8IUQ4 282 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 PQLC1Q8N2U9 271 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 C20orf27Q9GZN8 174 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 TIMMDC1Q9NPL8 285 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 TAF1LQ8IZX4 1826 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 CXorf49A8MYA2 514 aaPredicted RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 E7ESA3 106 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 TPD52L2O43399 206 aaKnown RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 CCNT2O60583 730 aaKnown RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 MAP3K6O95382 1288 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 VIL1P09327 827 aaKnown RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 FAM58BPP0C7Q3 252 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 ITGB5P18084 799 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 CPOXP36551 454 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 PPP1R2P3Q6NXS1 205 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 ATP2A3Q93084 1043 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 ANLNQ9NQW6 1124 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 ARHGAP26Q9UNA1 814 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 SORCS3Q9UPU3 1222 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 ZNF510Q9Y2H8 683 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 PCDHAC2Q9Y5I4 1007 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 SMCHD1A6NHR9 2005 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 SDR42E2A6NKP2 422 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 APBA3O96018 575 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 CD48P09326 243 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 OSBPP22059 807 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 MMP8P22894 467 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 MSX2P35548 267 aaPredicted RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 MTA1Q13330 715 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 TRAPPC3LQ5T215 181 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 TDRD10Q5VZ19 366 aaKnown RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 GMCL1P1Q8NEA9 526 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 MAML3Q96JK9 1138 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 CCT7Q99832 543 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 COPS7BQ9H9Q2 264 aaPredicted RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 HERC5Q9UII4 1024 aaKnown RBP13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 NFASCO94856 1347 aa13.3□□□□□ -0.28
SFSWAP-209ENST00000540469 CDK5RAP2Q96SN8 1893 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 E2F8A0AVK6 867 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 TBC1D12O60347 775 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 IL1BP01584 269 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 SMIM18P0DKX4 95 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 SLC1A6P48664 564 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 MRPS5P82675 430 aaKnown RBP13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 ZNF252P-AS1Q0IIN9 211 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 MTMR1Q13613 665 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 UGCGQ16739 394 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 SH3D19Q5HYK7 790 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 C6orf52Q5T4I8 152 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 VWA5B1Q5TIE3 1220 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 ANGEL2Q5VTE6 544 aaKnown RBP13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 GPAT2Q6NUI2 795 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 SCARA5Q6ZMJ2 495 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 CPXCR1Q8N123 301 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 RNF148Q8N7C7 305 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 ZNF516Q92618 1163 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 NRDE2Q9H7Z3 1164 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 SIRPGQ9P1W8 387 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 CNTNAP4Q9C0A0 1308 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 ABCA3Q99758 1704 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 E9PBE3 544 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 KLHL41O60662 606 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 CRTAMO95727 393 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 KRT3P12035 628 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 NUDT2P50583 147 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 FLOT2Q14254 428 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 CCDC142Q17RM4 750 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 APOBEC3HQ6NTF7 200 aaKnown RBP13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 NPNTQ6UXI9 565 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 AMIGO2Q86SJ2 522 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 FBXW8Q8N3Y1 598 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 EMC1Q8N766 993 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 DDI1Q8WTU0 396 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 PPP1R36Q96LQ0 422 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 COA1Q9GZY4 146 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 EPB41L1Q9H4G0 881 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 HEY1Q9Y5J3 304 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 AK5Q9Y6K8 562 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 TTLL13PA6NNM8 815 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms