RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 AP1G2O75843 785 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 VNN1O95497 513 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 SERPINF2P08697 491 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 HOXB2P14652 356 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 BIRC3Q13489 604 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 ANO4Q32M45 955 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 C10orf76Q5T2E6 689 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 MIB1Q86YT6 1006 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 CRYBG2Q8N1P7 616 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 KLF16Q9BXK1 252 aaPredicted RBP14.36□□□□□ -0.11
SS18-204ENST00000539244 SLC39A2Q9NP94 309 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 CYLDQ9NQC7 956 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 DMAC2Q9NW81 257 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 MARK1Q9P0L2 795 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 CALCOCO1Q9P1Z2 691 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 SLC6A14Q9UN76 642 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 NEUROG3Q9Y4Z2 214 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 ADAMTS9Q9P2N4 1935 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 ATXN2Q99700 1313 aaKnown RBP14.36□□□□□ -0.11
SS18-204ENST00000539244 IGHV1OR15-9A0A0B4J2B8 117 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 POLR2DO15514 142 aaKnown RBP14.35□□□□□ -0.11
SS18-204ENST00000539244 ZNF217O75362 1048 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 BEST1O76090 585 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 CASP1P29466 404 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 MAPK8P45983 427 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 PGFP49763 221 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 RPL6Q02878 288 aaKnown RBP14.35□□□□□ -0.11
SS18-204ENST00000539244 ZNF33AQ06730 810 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 ZACNQ401N2 412 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 EGFLAMQ63HQ2 1017 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 GRAMD4Q6IC98 578 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 ACOT1Q86TX2 421 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 UNC93AQ86WB7 457 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 SLC9A9Q8IVB4 645 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 GABRG3Q99928 467 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 NACA2Q9H009 215 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 BLZF1Q9H2G9 400 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 TLR8Q9NR97 1041 aaKnown RBP14.35□□□□□ -0.11
SS18-204ENST00000539244 WDR35Q9P2L0 1181 aa14.35□□□□□ -0.11
SS18-204ENST00000539244 K7ELQ4 463 aaPredicted RBP14.34□□□□□ -0.11
SS18-204ENST00000539244 TRIM24O15164 1050 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 RPN1P04843 607 aaKnown RBP14.34□□□□□ -0.11
SS18-204ENST00000539244 CFIP05156 583 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 IRF1P10914 325 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 P4HA1P13674 534 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 CCDC130P13994 396 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 TYRP14679 529 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 NDST1P52848 882 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 GFPT1Q06210 699 aaPredicted RBP14.34□□□□□ -0.11
SS18-204ENST00000539244 CUL4BQ13620 913 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 SGSM1Q2NKQ1 1148 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 KLHDC10Q6PID8 442 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 SCARA5Q6ZMJ2 495 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 SLC2A14Q8TDB8 520 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 IPO4Q8TEX9 1081 aaKnown RBP14.34□□□□□ -0.11
SS18-204ENST00000539244 TAF4BQ92750 862 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 XPO6Q96QU8 1125 aaKnown RBP14.34□□□□□ -0.11
SS18-204ENST00000539244 DNAJC17Q9NVM6 304 aaKnown RBP14.34□□□□□ -0.11
SS18-204ENST00000539244 RALYQ9UKM9 306 aaKnown RBP14.34□□□□□ -0.11
SS18-204ENST00000539244 SCML2Q9UQR0 700 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 MSRB2Q9Y3D2 182 aa14.34□□□□□ -0.11
SS18-204ENST00000539244 CACNA1GO43497 2377 aa14.33□□□□□ -0.11
SS18-204ENST00000539244 A0A1W2PQD8 194 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 FAM221BA6H8Z2 402 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 HHLA1C9JL84 531 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 H0Y626 953 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 GFRA2O00451 464 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 HYAL3O43820 417 aaPredicted RBP14.33□□□□□ -0.12
SS18-204ENST00000539244 KLRC4O43908 158 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 OPHN1O60890 802 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 TRIM16O95361 564 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 TBX18O95935 607 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 ASS1P00966 412 aaKnown RBP14.33□□□□□ -0.12
SS18-204ENST00000539244 NDUFV2P19404 249 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 ATP5C1P36542 298 aaKnown RBP14.33□□□□□ -0.12
SS18-204ENST00000539244 ASPAP45381 313 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 ATXN3P54252 364 aaPredicted RBP14.33□□□□□ -0.12
SS18-204ENST00000539244 MAP3K7CLP57077 242 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 GOLGA8FQ08AF8 430 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 GOLGA8DPQ0D2H9 430 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 RESP18Q5W5W9 173 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 SLC41A1Q8IVJ1 513 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 CHPFQ8IZ52 775 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 HDDC3Q8N4P3 179 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 ZNF276Q8N554 614 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 TMC2Q8TDI7 906 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 ZNF419Q96HQ0 510 aaPredicted RBP14.33□□□□□ -0.12
SS18-204ENST00000539244 ACOX2Q99424 681 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 HNRNPABQ99729 332 aaKnown RBP14.33□□□□□ -0.12
SS18-204ENST00000539244 BBS2Q9BXC9 721 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 BACH2Q9BYV9 841 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 PNPLA8Q9NP80 782 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 DNAAF2Q9NVR5 837 aaKnown RBP14.33□□□□□ -0.12
SS18-204ENST00000539244 OSER1Q9NX31 292 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 HMGXB4Q9UGU5 601 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 FBXO10Q9UK96 956 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 AKAP13Q12802 2813 aa14.33□□□□□ -0.12
SS18-204ENST00000539244 PRRT4C9JH25 899 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 NEDD8-MDP1E9PL57 170 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 ARHGAP33O14559 1287 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms