RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 PCDH18Q9HCL0 1135 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 VTA1Q9NP79 307 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 RABGEF1Q9UJ41 708 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 AP4E1Q9UPM8 1137 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 RLFQ13129 1914 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 TCRBV9S1A1TA0A576 114 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 CFAP69A5D8W1 941 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 SPTLC1O15269 473 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 BGNP21810 368 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 GMPRP36959 345 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 CPA2P48052 419 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 AFF1P51825 1210 aaKnown RBP9.05□□□□□ -0.96
UBE3B-208ENST00000538070 KCNT2Q6UVM3 1135 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 PCGF5Q86SE9 256 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 TLK2Q86UE8 772 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 ECHDC2Q86YB7 292 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 DEFB106AQ8N104 65 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 MCRS1Q96EZ8 462 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 CYTH2Q99418 400 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 TBCBQ99426 244 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 ZNF395Q9H8N7 513 aaPredicted RBP9.05□□□□□ -0.96
UBE3B-208ENST00000538070 CYP3A43Q9HB55 503 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 PCMTD2Q9NV79 361 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 UBP1Q9NZI7 540 aa9.05□□□□□ -0.96
UBE3B-208ENST00000538070 CASTOR2A6NHX0 329 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 KPNA7A9QM74 516 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 PFKMP08237 780 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 HOXA11P31270 313 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 ATICP31939 592 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SESN3P58005 492 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 WSCD1Q658N2 575 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 HEATR6Q6AI08 1181 aaKnown RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 LCLAT1Q6UWP7 414 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 CEP128Q6ZU80 1094 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 POLNQ7Z5Q5 900 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 TP53INP2Q8IXH6 220 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SIX6OS1Q8N1H7 587 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 MPP5Q8N3R9 675 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 ARMC2Q8NEN0 867 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SGSM3Q96HU1 749 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 LRRC37BQ96QE4 947 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 KLC2Q9H0B6 622 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SIK2Q9H0K1 926 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 AP5M1Q9H0R1 490 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 MYLK2Q9H1R3 596 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 KDM4CQ9H3R0 1056 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 NUDT5Q9UKK9 219 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 NME7Q9Y5B8 376 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SNX10Q9Y5X0 201 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 WDR81Q562E7 1941 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SMIM28A0A1B0GU29 152 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 CXorf49A8MYA2 514 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 ALDH3A1P30838 453 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 ARL4AP40617 200 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 HUNKP57058 714 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 DUSP28Q4G0W2 176 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 FYB2Q5VWT5 728 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 TRMT10BQ6PF06 316 aaKnown RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 ZCCHC23Q6ZST2 131 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 USP50Q70EL3 339 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 YTHDF3Q7Z739 585 aaKnown RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 NAT8LQ8N9F0 302 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 USP33Q8TEY7 942 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 ZNF75CPQ92670 426 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 RHOBTB2Q9BYZ6 727 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 ABHD16BQ9H3Z7 469 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 GJD2Q9UKL4 321 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 M0QYT0 321 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 COPEO14579 308 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 METTL18O95568 372 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 MYCP01106 439 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 HDAC4P56524 1084 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SLC8A3P57103 927 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 ELF3P78545 371 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SOX4Q06945 474 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 RCN2Q14257 317 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 TAF1CQ15572 869 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 C9orf57Q5W0N0 161 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 MTDHQ86UE4 582 aaKnown RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 VPS52Q8N1B4 723 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 TTC16Q8NEE8 873 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 CMASQ8NFW8 434 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SLC7A14Q8TBB6 771 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 AGR3Q8TD06 166 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 USP6NLQ92738 828 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 SERAC1Q96JX3 654 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 WDR83Q9BRX9 315 aaKnown RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 GBA2Q9HCG7 927 aaPredicted RBP9.04□□□□□ -0.96
UBE3B-208ENST00000538070 ACSS2Q9NR19 701 aa9.04□□□□□ -0.96
UBE3B-208ENST00000538070 GOLGA8TH3BQL2 631 aa9.03□□□□□ -0.96
UBE3B-208ENST00000538070 CYB561D2O14569 222 aa9.03□□□□□ -0.96
UBE3B-208ENST00000538070 PGK1P00558 417 aa9.03□□□□□ -0.96
UBE3B-208ENST00000538070 KRT16P08779 473 aa9.03□□□□□ -0.96
UBE3B-208ENST00000538070 CDC25CP30307 473 aa9.03□□□□□ -0.96
UBE3B-208ENST00000538070 CDH5P33151 784 aaPredicted RBP9.03□□□□□ -0.96
UBE3B-208ENST00000538070 CACNB2Q08289 660 aaPredicted RBP9.03□□□□□ -0.96
UBE3B-208ENST00000538070 ITIH4Q14624 930 aa9.03□□□□□ -0.96
UBE3B-208ENST00000538070 MFSD10Q14728 455 aa9.03□□□□□ -0.96
UBE3B-208ENST00000538070 BOLA3Q53S33 107 aa9.03□□□□□ -0.96
UBE3B-208ENST00000538070 OLFML2BQ68BL8 750 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms