RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 GUCY2DQ02846 1103 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 GABPB1Q06547 395 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 ZNF211Q13398 564 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 MTMR3Q13615 1198 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 C2CD6Q53TS8 623 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 HS6ST3Q8IZP7 471 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 LRRC52Q8N7C0 313 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 ASIC4Q96FT7 647 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 GDAP1L1Q96MZ0 367 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 NAP1L3Q99457 506 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 GDF3Q9NR23 364 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 ANAPC7Q9UJX3 599 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 USP34Q70CQ2 3546 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 TMEM221A6NGB7 291 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 ZSCAN5CA6NGD5 496 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 PRR33A8MZF0 331 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 M0R296 226 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 SART1O43290 800 aaKnown RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 GJA1P17302 382 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 PNPLA4P41247 253 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 PEX5P50542 639 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 YWHAEP62258 255 aaKnown RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 SOWAHAQ2M3V2 549 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 ZNF394Q53GI3 561 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 ZNF667Q5HYK9 610 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 PPP1R2P3Q6NXS1 205 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 PHF13Q86YI8 300 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 CPNE8Q86YQ8 564 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 FGF14Q92915 247 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 HPDLQ96IR7 371 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 VCPIP1Q96JH7 1222 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 C11orf70Q9BRQ4 267 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 DDX47Q9H0S4 455 aaKnown RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 EPB41L5Q9HCM4 733 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 ST7Q9NRC1 585 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 TMLHEQ9NVH6 421 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 ADAM22Q9P0K1 906 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 EPS15L1Q9UBC2 864 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 NXF1Q9UBU9 619 aaKnown RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 DSEQ9UL01 958 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 YIPF1Q9Y548 306 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 DOCK8Q8NF50 2099 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 CCDC66A2RUB6 948 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 CTNNA1P35221 906 aaKnown RBP12.53□□□□□ -0.4
CLIP1-208ENST00000537004 SIGLEC14Q08ET2 396 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 WDR72Q3MJ13 1102 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 PARM1Q6UWI2 310 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 MMS22LQ6ZRQ5 1243 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 PHLDB2Q86SQ0 1253 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 OSTM1Q86WC4 334 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 METTL23Q86XA0 190 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 NPAS3Q8IXF0 933 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 MCRS1Q96EZ8 462 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 BCO2Q9BYV7 579 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 ZCWPW1Q9H0M4 648 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 VIPAS39Q9H9C1 493 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 CDH7Q9ULB5 785 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 MRPS23Q9Y3D9 190 aaKnown RBP12.53□□□□□ -0.4
CLIP1-208ENST00000537004 DENND4AQ7Z401 1863 aa12.53□□□□□ -0.4
CLIP1-208ENST00000537004 ESYT3A0FGR9 886 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 HUS1O60921 280 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 CEBPBP17676 345 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 PTPN2P17706 415 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 BRD2P25440 801 aaKnown RBP12.52□□□□□ -0.4
CLIP1-208ENST00000537004 CTNNA2P26232 953 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 C1QBPQ07021 282 aaKnown RBP12.52□□□□□ -0.4
CLIP1-208ENST00000537004 PTP4A2Q12974 167 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 SMYD5Q6GMV2 418 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 AADACL2Q6P093 401 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 SLC44A3Q8N4M1 653 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 STKLD1Q8NE28 680 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 GPR152Q8TDT2 470 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 PBXIP1Q96AQ6 731 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 TRIM7Q9C029 511 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 SLITRK6Q9H5Y7 841 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 GDAP2Q9NXN4 497 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 DDX43Q9NXZ2 648 aaKnown RBP12.52□□□□□ -0.4
CLIP1-208ENST00000537004 PCDHA3Q9Y5H8 950 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 NUMBLQ9Y6R0 609 aa12.52□□□□□ -0.4
CLIP1-208ENST00000537004 NOTCH4Q99466 2003 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 GOLGA6L10A0A0M3HER8 536 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 LSM8O95777 96 aaKnown RBP12.52□□□□□ -0.41
CLIP1-208ENST00000537004 PAX3P23760 479 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 LMO2P25791 158 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 RAP1GAPP47736 663 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 CARSP49589 748 aaKnown RBP12.52□□□□□ -0.41
CLIP1-208ENST00000537004 GPS2Q13227 327 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 TDGQ13569 410 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 EMBQ6PCB8 327 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 RTL10Q7L3V2 364 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 ADAT2Q7Z6V5 191 aaKnown RBP12.52□□□□□ -0.41
CLIP1-208ENST00000537004 ADGRF2Q8IZF7 708 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 THEM5Q8N1Q8 247 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 KBTBD7Q8WVZ9 684 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 CASKIN2Q8WXE0 1202 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 IFT81Q8WYA0 676 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 TFAP2BQ92481 460 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 FAXDC2Q96IV6 333 aa12.52□□□□□ -0.41
CLIP1-208ENST00000537004 ZNF512Q96ME7 567 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms