RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 LRWD1Q9UFC0 647 aa8.84□□□□□ -0.99
CLIP1-206ENST00000535290 DERAQ9Y315 318 aa8.84□□□□□ -0.99
CLIP1-206ENST00000535290 C2CD2Q9Y426 696 aa8.84□□□□□ -0.99
CLIP1-206ENST00000535290 FLNCQ14315 2725 aa8.84□□□□□ -0.99
CLIP1-206ENST00000535290 TLN1Q9Y490 2541 aaKnown RBP8.84□□□□□ -0.99
CLIP1-206ENST00000535290 USP9YO00507 2555 aaPredicted RBP8.83□□□□□ -1
CLIP1-206ENST00000535290 NBASA2RRP1 2371 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 GFRA2O00451 464 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 HNRNPDLO14979 420 aaKnown RBP8.83□□□□□ -1
CLIP1-206ENST00000535290 LDOC1O95751 146 aaPredicted RBP8.83□□□□□ -1
CLIP1-206ENST00000535290 CDK4P11802 303 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 GP1BBP13224 206 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 BDNFP23560 247 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 OXTRP30559 389 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 CTSKP43235 329 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 MAGEA11P43364 429 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 ACOT2P49753 483 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 LIG4P49917 911 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 FOSBP53539 338 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 UCNP55089 124 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 TAF10Q12962 218 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 NFATC3Q12968 1075 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 TEAD4Q15561 434 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 SV2CQ496J9 727 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 BMP2KLQ5H9B9 411 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 BROXQ5VW32 411 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 KIAA1614Q5VZ46 1190 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 SLC39A4Q6P5W5 647 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 FAM171BQ6P995 826 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 DENND5BQ6ZUT9 1274 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 KCNK18Q7Z418 384 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 FAM124AQ86V42 546 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 SKAP1Q86WV1 359 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 CACUL1Q86Y37 369 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 TMPRSS6Q8IU80 811 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 SNRNP27Q8WVK2 155 aaKnown RBP8.83□□□□□ -1
CLIP1-206ENST00000535290 SCFD1Q8WVM8 642 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 OTUB2Q96DC9 234 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 FUBP3Q96I24 572 aaKnown RBP eCLIP8.83□□□□□ -1
CLIP1-206ENST00000535290 NUP58Q9BVL2 599 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 TTLL2Q9BWV7 592 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 C6orf106Q9H6K1 298 aaPredicted RBP8.83□□□□□ -1
CLIP1-206ENST00000535290 DNM3Q9UQ16 869 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 STON1Q9Y6Q2 735 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 DOPEY1Q5JWR5 2465 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 ANK1P16157 1881 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 NUMA1Q14980 2115 aa8.83□□□□□ -1
CLIP1-206ENST00000535290 A0A1B0GTQ1 180 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 KLK10O43240 276 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 PAPSS1O43252 624 aaPredicted RBP8.82□□□□□ -1
CLIP1-206ENST00000535290 COCHO43405 550 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 IGLV3-19P01714 112 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 GLDCP23378 1020 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 GUCY2CP25092 1073 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 GRIA4P48058 902 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 PCBP4P57723 403 aaKnown RBP8.82□□□□□ -1
CLIP1-206ENST00000535290 NFKB2Q00653 900 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 MYL7Q01449 175 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 VAC14Q08AM6 782 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 INAVAQ3KP66 663 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 C6orf132Q5T0Z8 1188 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 ZNF574Q6ZN55 896 aaPredicted RBP8.82□□□□□ -1
CLIP1-206ENST00000535290 DDX42Q86XP3 938 aaKnown RBP eCLIP8.82□□□□□ -1
CLIP1-206ENST00000535290 EXD3Q8N9H8 876 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 SNX29Q8TEQ0 813 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 MYLPFQ96A32 169 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 SIPA1Q96FS4 1042 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.82□□□□□ -1
CLIP1-206ENST00000535290 FAM117AQ9C073 453 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 ASB7Q9H672 318 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 CLCA2Q9UQC9 943 aa8.82□□□□□ -1
CLIP1-206ENST00000535290 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.82□□□□□ -1
CLIP1-206ENST00000535290 HEMK1Q9Y5R4 338 aaPredicted RBP8.82□□□□□ -1
CLIP1-206ENST00000535290 NPHP3-ACAD11A0A0J9YXS1 232 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 PP2D1A8MPX8 630 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 TISP43B9A030 160 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 NEDD8-MDP1E9PL57 170 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 LAD1O00515 517 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 GABRDO14764 452 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 CACNG3O60359 315 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 HUS1O60921 280 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 PIGRP01833 764 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 CISD3P0C7P0 127 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 TYRP14679 529 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 LMO2P25791 158 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 POLR2BP30876 1174 aaKnown RBP8.81□□□□□ -1
CLIP1-206ENST00000535290 ACSL1P33121 698 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 PPP3CCP48454 512 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 PSMC1P62191 440 aaKnown RBP8.81□□□□□ -1
CLIP1-206ENST00000535290 NOP14P78316 857 aaKnown RBP8.81□□□□□ -1
CLIP1-206ENST00000535290 STARD3Q14849 445 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 SHBQ15464 509 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 VSTM1Q6UX27 236 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 TPGS1Q6ZTW0 290 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 DHX40Q8IX18 779 aaKnown RBP8.81□□□□□ -1
CLIP1-206ENST00000535290 TMEM86AQ8N2M4 240 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 EID2Q8N6I1 236 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 DCBLD1Q8N8Z6 715 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 KCNE4Q8WWG9 221 aa8.81□□□□□ -1
CLIP1-206ENST00000535290 WASF1Q92558 559 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms