RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	SLC3A2	P08195	630 aa	Known RBP	3.31	□□□□□ -1.88
CD44-238	ENST00000534296	IFIT2	P09913	472 aa	Known RBP	3.31	□□□□□ -1.88
CD44-238	ENST00000534296	TMEM225B	P0DP42	221 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	CYP2A6	P11509	494 aa	Predicted RBP	3.31	□□□□□ -1.88
CD44-238	ENST00000534296	MYL4	P12829	197 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	DIO1	P49895	249 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	DGKQ	P52824	942 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	LMAN2	Q12907	356 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	LARS2	Q15031	903 aa	Known RBP	3.31	□□□□□ -1.88
CD44-238	ENST00000534296	SAFB	Q15424	915 aa	Known RBP eCLIP	3.31	□□□□□ -1.88
CD44-238	ENST00000534296	RNASE12	Q5GAN4	147 aa	Known RBP	3.31	□□□□□ -1.88
CD44-238	ENST00000534296	PXDC1	Q5TGL8	231 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	ZNF626	Q68DY1	528 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	CLEC9A	Q6UXN8	241 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	ZNF813	Q6ZN06	617 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	FAM71D	Q8N9W8	422 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	C8orf58	Q8NAV2	365 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	3.31	□□□□□ -1.88
CD44-238	ENST00000534296	ABHD5	Q8WTS1	349 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	TIFA	Q96CG3	184 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	HIC2	Q96JB3	615 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	PSMD1	Q99460	953 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	APOL5	Q9BWW9	433 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	SLC25A32	Q9H2D1	315 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	DDX21	Q9NR30	783 aa	Known RBP eCLIP	3.31	□□□□□ -1.88
CD44-238	ENST00000534296	RNF7	Q9UBF6	113 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	RIMKLB	Q9ULI2	386 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	ARID4B	Q4LE39	1312 aa	Predicted RBP	3.3	□□□□□ -1.88
CD44-238	ENST00000534296	POM121B	A6NF01	834 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	CLCA1	A8K7I4	914 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	KCNU1	A8MYU2	1149 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	INO80B-WBP1	J3KQ70	363 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	SPRY2	O43597	315 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	A1BG	P04217	495 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	GNAL	P38405	381 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	ARHGAP25	P42331	645 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	GHRHR	Q02643	423 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	CFHR3	Q02985	330 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	CCDC15	Q0P6D6	951 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	GPS1	Q13098	491 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	COBLL1	Q53SF7	1204 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	CEP78	Q5JTW2	689 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	FAXC	Q5TGI0	409 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	ZNF66	Q6ZN08	573 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	KRT28	Q7Z3Y7	464 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	KRT73	Q86Y46	540 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	C11orf44	Q8N8P7	122 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	ATP11C	Q8NB49	1132 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	ACRBP	Q8NEB7	543 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	MAFA	Q8NHW3	353 aa	Predicted RBP	3.3	□□□□□ -1.88
CD44-238	ENST00000534296	OSR1	Q8TAX0	266 aa	Predicted RBP	3.3	□□□□□ -1.88
CD44-238	ENST00000534296	TNIP3	Q96KP6	325 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	FAM227B	Q96M60	508 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	EFHD1	Q9BUP0	239 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	SARG	Q9BW04	601 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	USP29	Q9HBJ7	922 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	ZBTB26	Q9HCK0	441 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	TUBA8	Q9NY65	449 aa	Predicted RBP	3.3	□□□□□ -1.88
CD44-238	ENST00000534296	CAPN11	Q9UMQ6	739 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	FAM50B	Q9Y247	325 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	SLC27A6	Q9Y2P4	619 aa		3.3	□□□□□ -1.88
CD44-238	ENST00000534296	CYP2D7	A0A087X1C5	515 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	CCDC194	A0A1B0GVG4	234 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	ADAMTS3	O15072	1205 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	KPNA5	O15131	536 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	WDR47	O94967	919 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	BMP15	O95972	392 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	NHLRC4	P0CG21	123 aa	Predicted RBP	3.29	□□□□□ -1.88
CD44-238	ENST00000534296	YY1	P25490	414 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	TACR3	P29371	465 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	STT3A	P46977	705 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	COPA	P53621	1224 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	PSG6	Q00889	435 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	KCNAB1	Q14722	419 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	MFSD13A	Q14CX5	517 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	TRIP6	Q15654	476 aa	Known RBP	3.29	□□□□□ -1.88
CD44-238	ENST00000534296	PFKFB3	Q16875	520 aa	Predicted RBP	3.29	□□□□□ -1.88
CD44-238	ENST00000534296	EPHA10	Q5JZY3	1008 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	MANEAL	Q5VSG8	457 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	MRNIP	Q6NTE8	343 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	RANBP10	Q6VN20	620 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	USP49	Q70CQ1	688 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	TTC30A	Q86WT1	665 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	C12orf76	Q8N812	135 aa	Predicted RBP	3.29	□□□□□ -1.88
CD44-238	ENST00000534296	PIGO	Q8TEQ8	1089 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	LRRC46	Q96FV0	321 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	EIF3C	Q99613	913 aa	Known RBP	3.29	□□□□□ -1.88
CD44-238	ENST00000534296	COLEC11	Q9BWP8	271 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	C1QTNF7	Q9BXJ2	289 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	ADGRE3	Q9BY15	652 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	PRSS22	Q9GZN4	317 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	STARD7	Q9NQZ5	370 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	ARL8B	Q9NVJ2	186 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	CEP83	Q9Y592	693 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	TNFRSF18	Q9Y5U5	241 aa		3.29	□□□□□ -1.88
CD44-238	ENST00000534296	COL15A1	P39059	1388 aa		3.28	□□□□□ -1.88
CD44-238	ENST00000534296	SMIM35	A0A1B0GVV1	85 aa		3.28	□□□□□ -1.88
CD44-238	ENST00000534296	TCRBV5S1A1T	A0A578	114 aa		3.28	□□□□□ -1.88
CD44-238	ENST00000534296	TTC34	A8MYJ7	566 aa		3.28	□□□□□ -1.88
CD44-238	ENST00000534296		H3BNC9	293 aa		3.28	□□□□□ -1.88

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