RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 VPS50Q96JG6 964 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 RPS6KC1Q96S38 1066 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 WDR12Q9GZL7 423 aaKnown RBP4.49□□□□□ -1.69
CD44-233ENST00000531141 IL17RBQ9NRM6 502 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 TAGLN3Q9UI15 199 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 CDC23Q9UJX2 597 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 ZMYND8Q9ULU4 1186 aaPredicted RBP4.49□□□□□ -1.69
CD44-233ENST00000531141 COMMD10Q9Y6G5 202 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 KAT6AQ92794 2004 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 FER1L4A9Z1Z3 1794 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 A0A087WV62 115 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 GOLGA6L3A6NEY3 463 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 H7C1Q1 480 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 AP4M1O00189 453 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 ZNF213O14771 459 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 SPRY2O43597 315 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 JTBO76095 146 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 WDR47O94967 919 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 VIPP01282 170 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 HNRNPCP07910 306 aaKnown RBP eCLIP4.48□□□□□ -1.69
CD44-233ENST00000531141 TMEM225BP0DP42 221 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 CREB1P16220 341 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 PECAM1P16284 738 aaPredicted RBP4.48□□□□□ -1.69
CD44-233ENST00000531141 ADRA1DP25100 572 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 IL6STP40189 918 aaPredicted RBP4.48□□□□□ -1.69
CD44-233ENST00000531141 CYP4F2P78329 520 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 PSG6Q00889 435 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 GRM1Q13255 1194 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 BIRC2Q13490 618 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 ACOX1Q15067 660 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 RAB30Q15771 203 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 SMN1Q16637 294 aaKnown RBP4.48□□□□□ -1.69
CD44-233ENST00000531141 RAP1GAP2Q684P5 730 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 C1orf228Q6PIY5 440 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 TRIM72Q6ZMU5 477 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 RD3Q7Z3Z2 195 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 ARHGEF25Q86VW2 580 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 ADGRG3Q86Y34 549 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 MYLK4Q86YV6 388 aaPredicted RBP4.48□□□□□ -1.69
CD44-233ENST00000531141 FAM98AQ8NCA5 519 aaKnown RBP4.48□□□□□ -1.69
CD44-233ENST00000531141 SUN3Q8TAQ9 357 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 MUL1Q969V5 352 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 CTHRC1Q96CG8 243 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 GRAMD1AQ96CP6 724 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 DAZAP1Q96EP5 407 aaKnown RBP4.48□□□□□ -1.69
CD44-233ENST00000531141 LENG8Q96PV6 779 aaPredicted RBP4.48□□□□□ -1.69
CD44-233ENST00000531141 R3HDMLQ9H3Y0 253 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 TMEM8AQ9HCN3 771 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 ADAM21Q9UKJ8 722 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 MAGED2Q9UNF1 606 aaPredicted RBP4.48□□□□□ -1.69
CD44-233ENST00000531141 DAAM1Q9Y4D1 1078 aa4.48□□□□□ -1.69
CD44-233ENST00000531141 FFAR2O15552 330 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 SKAP2O75563 359 aaPredicted RBP4.47□□□□□ -1.69
CD44-233ENST00000531141 C1QL1O75973 258 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 FGAP02671 866 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 FPR3P25089 353 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 MCM5P33992 734 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 DGKQP52824 942 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 TXNL4AP83876 142 aaKnown RBP4.47□□□□□ -1.69
CD44-233ENST00000531141 ARHGAP15Q53QZ3 475 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 TMEM63BQ5T3F8 832 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 L1TD1Q5T7N2 865 aaKnown RBP4.47□□□□□ -1.69
CD44-233ENST00000531141 PGBD2Q6P3X8 592 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 NAPRTQ6XQN6 538 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 C11orf44Q8N8P7 122 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 PNPLA1Q8N8W4 532 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 IPO4Q8TEX9 1081 aaKnown RBP4.47□□□□□ -1.69
CD44-233ENST00000531141 REPS1Q96D71 796 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 ZG16BQ96DA0 208 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 C18orf8Q96DM3 657 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 SNX18Q96RF0 628 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 MMS19Q96T76 1030 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 NUDT22Q9BRQ3 303 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 CRB3Q9BUF7 120 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 HELLSQ9NRZ9 838 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 SERGEFQ9UGK8 458 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 DTNAQ9Y4J8 743 aa4.47□□□□□ -1.69
CD44-233ENST00000531141 SPATA31A6Q5VVP1 1343 aa4.46□□□□□ -1.69
CD44-233ENST00000531141 TARM1B6A8C7 271 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 F5H423 210 aaPredicted RBP4.46□□□□□ -1.7
CD44-233ENST00000531141 PCDH17O14917 1159 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 CBFA2T3O75081 653 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 PEX14O75381 377 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 C1RP00736 705 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 IGLV2-14P01704 120 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 DIO1P49895 249 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 NHLH1Q02575 133 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 ICA1Q05084 483 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 LMAN2Q12907 356 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 MTAPQ13126 283 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 KRT72Q14CN4 511 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 RNASE12Q5GAN4 147 aaKnown RBP4.46□□□□□ -1.7
CD44-233ENST00000531141 TMTC4Q5T4D3 741 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 FCRLBQ6BAA4 426 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 FBXO42Q6P3S6 717 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 TLDC1Q6P9B6 456 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 GATAD2AQ86YP4 633 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 RASGRP3Q8IV61 690 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 LINC01465Q8N7H1 131 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 ENAHQ8N8S7 591 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms