RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 DAB2IPQ5VWQ8 1189 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 ARFGAP1Q8N6T3 406 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 C2orf15Q8WU43 125 aaKnown RBP22.15■■□□□ 1.14
VPS28-212ENST00000530836 PPP2R3CQ969Q6 453 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 RUNDC3BQ96NL0 473 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 ANKZF1Q9H8Y5 726 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 PCDHB5Q9Y5E4 795 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 PRRC2BQ5JSZ5 2229 aaKnown RBP22.14■■□□□ 1.14
VPS28-212ENST00000530836 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.14■■□□□ 1.14
VPS28-212ENST00000530836 ZBED1O96006 694 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 RHOXF2BP0C7M4 288 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 MIPP30301 263 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 CA8P35219 290 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 NOS2P35228 1153 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 MAGEA11P43364 429 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 DAOAP59103 153 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 ZFYVE27Q5T4F4 411 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 TRNP1Q6NT89 227 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 ADGRD2Q7Z7M1 963 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 CCDC50Q8IVM0 306 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 CCDC26Q8TAB7 109 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 CLEC4CQ8WTT0 213 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 PIK3R5Q8WYR1 880 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 CENPIQ92674 756 aaPredicted RBP22.14■■□□□ 1.14
VPS28-212ENST00000530836 TBCBQ99426 244 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 RHOXF2Q9BQY4 288 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 AP1M1Q9BXS5 423 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 POPDC2Q9HBU9 364 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 RXFP1Q9HBX9 757 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 HOMER3Q9NSC5 361 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 RRN3Q9NYV6 651 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 STAP1Q9ULZ2 295 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 EFR3BQ9Y2G0 817 aa22.14■■□□□ 1.14
VPS28-212ENST00000530836 MYO7AQ13402 2215 aa22.14■■□□□ 1.13
VPS28-212ENST00000530836 TRIM66O15016 1216 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 PRPSAP2O60256 369 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 TBC1D4O60343 1298 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 TRUB2O95900 331 aaKnown RBP22.13■■□□□ 1.13
VPS28-212ENST00000530836 KRT1P04264 644 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 CACNA2D1P54289 1103 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 BOLA3Q53S33 107 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 PM20D1Q6GTS8 502 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 WDR93Q6P2C0 686 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 STRADAQ7RTN6 431 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 MAATS1Q7Z4T9 603 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 MICALL1Q8N3F8 863 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 FAM149B1Q96BN6 582 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 C8orf48Q96LL4 319 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 CFAP57Q96MR6 1250 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 PARD6BQ9BYG5 372 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 ULBP1Q9BZM6 244 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 TLE6Q9H808 572 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.13■■□□□ 1.135e-6■□□□□ 10.2
VPS28-212ENST00000530836 TMEM30AQ9NV96 361 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.13■■□□□ 1.13
VPS28-212ENST00000530836 CNPP09543 421 aaKnown RBP22.13■■□□□ 1.13
VPS28-212ENST00000530836 GJC1P36383 396 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 GRIK1P39086 918 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 GPR17Q13304 367 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 SLC25A52Q3SY17 297 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 PRSS55Q6UWB4 352 aaPredicted RBP22.13■■□□□ 1.13
VPS28-212ENST00000530836 SPPL2BQ8TCT7 592 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 FAM172AQ8WUF8 416 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 SLC2A13Q96QE2 648 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 KRT12Q99456 494 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 EMILIN2Q9BXX0 1053 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 FNIP2Q9P278 1114 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 RAB21Q9UL25 225 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 BACE2Q9Y5Z0 518 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 USP3Q9Y6I4 520 aa22.13■■□□□ 1.13
VPS28-212ENST00000530836 PER2O15055 1255 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 TCF4P15884 667 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 CHRNA3P32297 505 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 NDUFV1P49821 464 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 CREMQ03060 361 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 PSMD5Q16401 504 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 TFDP3Q5H9I0 405 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 AADACL2Q6P093 401 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 BEND5Q7L4P6 421 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 RBM23Q86U06 439 aaKnown RBP22.12■■□□□ 1.13
VPS28-212ENST00000530836 CMASQ8NFW8 434 aaPredicted RBP22.12■■□□□ 1.13
VPS28-212ENST00000530836 TEKT4Q8WW24 435 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 KLHL5Q96PQ7 755 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 SLITRK1Q96PX8 696 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 CDCA3Q99618 268 aaPredicted RBP22.12■■□□□ 1.13
VPS28-212ENST00000530836 LRRC1Q9BTT6 524 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 OSBPL8Q9BZF1 889 aa22.12■■□□□ 1.13
VPS28-212ENST00000530836 ABI2Q9NYB9 513 aaPredicted RBP22.12■■□□□ 1.13
VPS28-212ENST00000530836 TEX28O15482 410 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 TJP3O95049 919 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 OR4Q2P0C623 313 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 CPB1P15086 417 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 CYP2F1P24903 491 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 NRIP1P48552 1158 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 ATP11AP98196 1134 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 HYAL1Q12794 435 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 BRD3Q15059 726 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 CCDC85BQ15834 202 aaPredicted RBP22.11■■□□□ 1.13
VPS28-212ENST00000530836 CYP1B1Q16678 543 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 DUSP6Q16828 381 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms