RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CSNK1G1Q9HCP0 422 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 CD248Q9HCU0 757 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 CALCOCO1Q9P1Z2 691 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 HMGXB4Q9UGU5 601 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 STARD13Q9Y3M8 1113 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 ASPMQ8IZT6 3477 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.93■■□□□ 1.58
CPSF1-202ENST00000527827 A0A1W2PQF6 199 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 AP5Z1O43299 807 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 TLR5O60602 858 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 NTSR1P30989 418 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 HOXD12P35452 270 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 RPL6Q02878 288 aaKnown RBP24.93■■□□□ 1.58
CPSF1-202ENST00000527827 ORC1Q13415 861 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 EGFLAMQ63HQ2 1017 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 HTR3DQ70Z44 454 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 PIP4P1Q86T03 277 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 DEFB119Q8N690 84 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 NACA2Q9H009 215 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 DMAC2Q9NW81 257 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 CACNA1GO43497 2377 aa24.93■■□□□ 1.58
CPSF1-202ENST00000527827 K7ELQ4 463 aaPredicted RBP24.92■■□□□ 1.58
CPSF1-202ENST00000527827 CLSTN1O94985 981 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 TBX18O95935 607 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 CFIP05156 583 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 AFMP43652 599 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 NDST1P52848 882 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 DLG4P78352 724 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 SEMA3BQ13214 749 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 DUOXA1Q1HG43 343 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 GRAMD4Q6IC98 578 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 NUDT18Q6ZVK8 323 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 CRYBG2Q8N1P7 616 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 SLC2A14Q8TDB8 520 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 ACOX2Q99424 681 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 FBXO44Q9H4M3 255 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 SLC32A1Q9H598 525 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 DNAJC17Q9NVM6 304 aaKnown RBP24.92■■□□□ 1.58
CPSF1-202ENST00000527827 SLC6A14Q9UN76 642 aa24.92■■□□□ 1.58
CPSF1-202ENST00000527827 IGHV1OR15-9A0A0B4J2B8 117 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 UPK3BL1B0FP48 263 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 UPK3BL2E5RIL1 263 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 MAP3K7CLP57077 242 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 KIAA1211LQ6NV74 962 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 SLC36A4Q6YBV0 504 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 GRAMD1CQ8IYS0 662 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 CEP76Q8TAP6 659 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 GOLGA5Q8TBA6 731 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 CAPN10Q9HC96 672 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 OSER1Q9NX31 292 aa24.91■■□□□ 1.58
CPSF1-202ENST00000527827 PRRT4C9JH25 899 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 NEDD8-MDP1E9PL57 170 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 KLRC4O43908 158 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 CACNG3O60359 315 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 ZNF33AQ06730 810 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 ZACNQ401N2 412 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 GPRIN1Q7Z2K8 1008 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 SLC9A9Q8IVB4 645 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 C12orf29Q8N999 325 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 CYLDQ9NQC7 956 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 TLR8Q9NR97 1041 aaKnown RBP24.9■■□□□ 1.58
CPSF1-202ENST00000527827 FAM49BQ9NUQ9 324 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 MARK1Q9P0L2 795 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 PCDHA7Q9UN72 937 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 SPEGQ15772 3267 aa24.9■■□□□ 1.58
CPSF1-202ENST00000527827 SPAARA0A1B0GVQ0 90 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 TMEM8BA6NDV4 472 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 HYAL3O43820 417 aaPredicted RBP24.89■■□□□ 1.58
CPSF1-202ENST00000527827 CENPBP07199 599 aaPredicted RBP24.89■■□□□ 1.58
CPSF1-202ENST00000527827 SERPINF2P08697 491 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 TYRP14679 529 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 NDUFV2P19404 249 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 STK4Q13043 487 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 SGSM1Q2NKQ1 1148 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 FOXD4L5Q5VV16 416 aaPredicted RBP24.89■■□□□ 1.58
CPSF1-202ENST00000527827 RESP18Q5W5W9 173 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 TOGARAM2Q6ZUX3 1019 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 UNC93AQ86WB7 457 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 SLC41A1Q8IVJ1 513 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 KIAA0895Q8NCT3 520 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 IPO4Q8TEX9 1081 aaKnown RBP24.89■■□□□ 1.58
CPSF1-202ENST00000527827 TMEM174Q8WUU8 243 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 FOXD4L4Q8WXT5 416 aaPredicted RBP24.89■■□□□ 1.58
CPSF1-202ENST00000527827 ERLEC1Q96DZ1 483 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 XPO6Q96QU8 1125 aaKnown RBP24.89■■□□□ 1.58
CPSF1-202ENST00000527827 GTPBP2Q9BX10 602 aaKnown RBP24.89■■□□□ 1.58
CPSF1-202ENST00000527827 BBS2Q9BXC9 721 aa24.89■■□□□ 1.58
CPSF1-202ENST00000527827 HHLA1C9JL84 531 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 P4HA1P13674 534 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 ATP5C1P36542 298 aaKnown RBP24.88■■□□□ 1.57
CPSF1-202ENST00000527827 ASPAP45381 313 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 GFPT1Q06210 699 aaPredicted RBP24.88■■□□□ 1.57
CPSF1-202ENST00000527827 FOXD4L6Q3SYB3 417 aaPredicted RBP24.88■■□□□ 1.57
CPSF1-202ENST00000527827 SPOPLQ6IQ16 392 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 FOXD4L3Q6VB84 417 aaPredicted RBP24.88■■□□□ 1.57
CPSF1-202ENST00000527827 TPGS1Q6ZTW0 290 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 CHPFQ8IZ52 775 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 GABRG3Q99928 467 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 NMUR1Q9HB89 426 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 FAM13BQ9NYF5 915 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms