RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.95■■□□□ 1.15e-6■□□□□ 10.2
VPS28-208ENST00000527797 CCDC85CA6NKD9 419 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 M0QYT0 321 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 DYNC1I1O14576 645 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 SOAT2O75908 522 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 ENDOD1O94919 500 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 ABLIM3O94929 683 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 RTN3O95197 1032 aaPredicted RBP21.94■■□□□ 1.1
VPS28-208ENST00000527797 RHOXF2BP0C7M4 288 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 RALAP11233 206 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 DNAJB2P25686 324 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 YWHAGP61981 247 aaKnown RBP eCLIP21.94■■□□□ 1.1
VPS28-208ENST00000527797 CREMQ03060 361 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 MFSD7Q6UXD7 560 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 DENND5BQ6ZUT9 1274 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 KLHL7Q8IXQ5 586 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 TEKT4Q8WW24 435 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 HSPH1Q92598 858 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 RHOXF2Q9BQY4 288 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 ADAM33Q9BZ11 813 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 COMMD8Q9NX08 183 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 HSFX1Q9UBD0 423 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 SCML2Q9UQR0 700 aa21.94■■□□□ 1.1
VPS28-208ENST00000527797 PTPRDP23468 1912 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 KDELR1P24390 212 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 RDXP35241 583 aaKnown RBP21.93■■□□□ 1.1
VPS28-208ENST00000527797 BMPR1AP36894 532 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 RAB33AQ14088 237 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 LLGL1Q15334 1064 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 PPP2R5EQ16537 467 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 BTBD8Q5XKL5 378 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 CYP4V2Q6ZWL3 525 aaPredicted RBP21.93■■□□□ 1.1
VPS28-208ENST00000527797 BNIPLQ7Z465 357 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 SLC7A14Q8TBB6 771 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 EDEM1Q92611 657 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 CEP295NLQ96MC4 621 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 KRT12Q99456 494 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 HEMGNQ9BXL5 484 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 ZBP1Q9H171 429 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 ABCC13Q9NSE7 274 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 IL37Q9NZH6 218 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 FNIP2Q9P278 1114 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 RWDD3Q9Y3V2 267 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 NR2E1Q9Y466 385 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 NR2E3Q9Y5X4 410 aa21.93■■□□□ 1.1
VPS28-208ENST00000527797 LCHNA4D1U4 455 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 CTSAP10619 480 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 ATF2P15336 505 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 PTPN7P35236 360 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 PITX1P78337 314 aaPredicted RBP21.92■■□□□ 1.1
VPS28-208ENST00000527797 DEUP1Q05D60 604 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 GLE1Q53GS7 698 aaKnown RBP21.92■■□□□ 1.1
VPS28-208ENST00000527797 TFDP3Q5H9I0 405 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 MON1AQ86VX9 555 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 ARHGAP18Q8N392 663 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 GPR152Q8TDT2 470 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 AUTS2Q8WXX7 1259 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 EPC1Q9H2F5 836 aa21.92■■□□□ 1.1
VPS28-208ENST00000527797 TCRBV7S2A1N4TA0A589 114 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 C3orf70A6NLC5 250 aaPredicted RBP21.91■■□□□ 1.1
VPS28-208ENST00000527797 F9P00740 461 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 YWHAQP27348 245 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 CTNNB1P35222 781 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 CDKN2BP42772 138 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 ATXN1P54253 815 aaKnown RBP21.91■■□□□ 1.1
VPS28-208ENST00000527797 NME3Q13232 169 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 ERMARDQ5T6L9 678 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 OTUD1Q5VV17 481 aaPredicted RBP21.91■■□□□ 1.1
VPS28-208ENST00000527797 C8orf74Q6P047 294 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 ANKS1BQ7Z6G8 1248 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 MAP7D3Q8IWC1 876 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 STKLD1Q8NE28 680 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 PGAP3Q96FM1 320 aaPredicted RBP21.91■■□□□ 1.1
VPS28-208ENST00000527797 LRRC1Q9BTT6 524 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 RXFP1Q9HBX9 757 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.91■■□□□ 1.1
VPS28-208ENST00000527797 CALCOCO1Q9P1Z2 691 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 hCG_1818297A0A087WSY0 165 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 SYNJ2BP-COX16A0A087WUM0 186 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 MDM4O15151 490 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 LILRB3O75022 631 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 TJP3O95049 919 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 USP46P62068 366 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 KRT81Q14533 505 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 PDK2Q15119 407 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 COL13A1Q5TAT6 717 aaPredicted RBP21.91■■□□□ 1.1
VPS28-208ENST00000527797 SCD5Q86SK9 330 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 ZDHHC14Q8IZN3 488 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 PRELID2Q8N945 189 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 SNRNP25Q9BV90 132 aaKnown RBP21.91■■□□□ 1.1
VPS28-208ENST00000527797 DDX47Q9H0S4 455 aaKnown RBP21.91■■□□□ 1.1
VPS28-208ENST00000527797 SLITRK6Q9H5Y7 841 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 ANKZF1Q9H8Y5 726 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 COX16Q9P0S2 106 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 MAFFQ9ULX9 164 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 LZTS1Q9Y250 596 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 EFR3BQ9Y2G0 817 aa21.91■■□□□ 1.1
VPS28-208ENST00000527797 A0A1W2PQH9 124 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 FAM92AA1XBS5 289 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 SLC38A8A6NNN8 435 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms