RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 HNRNPCP07910 306 aaKnown RBP eCLIP5.35□□□□□ -1.55
CD44-220ENST00000525688 ACRV1P26436 265 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 NPTX2P47972 431 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 NDUFV1P49821 464 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 CXADRP78310 365 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 JAG1P78504 1218 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 FPGSQ05932 587 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 CRHR2Q13324 411 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 TOB2Q14106 344 aaPredicted RBP5.35□□□□□ -1.55
CD44-220ENST00000525688 POSTNQ15063 836 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 LIN54Q6MZP7 749 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 JMJD6Q6NYC1 403 aaPredicted RBP5.35□□□□□ -1.55
CD44-220ENST00000525688 GATAD2AQ86YP4 633 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 TMPRSS6Q8IU80 811 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 LMNTD2Q8IXW0 634 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.35□□□□□ -1.55
CD44-220ENST00000525688 NAXEQ8NCW5 288 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 OTUD7AQ8TE49 926 aaPredicted RBP5.35□□□□□ -1.55
CD44-220ENST00000525688 SNX19Q92543 992 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 RSC1A1Q92681 617 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 HELLSQ9NRZ9 838 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 TMOD4Q9NZQ9 345 aa5.35□□□□□ -1.55
CD44-220ENST00000525688 HERC5Q9UII4 1024 aaKnown RBP5.35□□□□□ -1.55
CD44-220ENST00000525688 SCAF8Q9UPN6 1271 aaKnown RBP5.35□□□□□ -1.55
CD44-220ENST00000525688 MRPS17Q9Y2R5 130 aaKnown RBP5.35□□□□□ -1.55
CD44-220ENST00000525688 ARHGEF5Q12774 1597 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 AGLP35573 1532 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 ATP7AQ04656 1500 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 RTEL1-TNFRSF6BF6WH68 1400 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 A0A0B4J269 797 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 IPO5O00410 1097 aaKnown RBP5.34□□□□□ -1.55
CD44-220ENST00000525688 ASNA1O43681 348 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 RASAL1O95294 804 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 TNFRSF6BO95407 300 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 IGHDP01880 384 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 PECAM1P16284 738 aaPredicted RBP5.34□□□□□ -1.55
CD44-220ENST00000525688 HOXC13P31276 330 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 TUBB3Q13509 450 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 ATP1A4Q13733 1029 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 CCNIQ14094 377 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 PTCHD3Q3KNS1 767 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 RBM20Q5T481 1227 aaKnown RBP5.34□□□□□ -1.55
CD44-220ENST00000525688 CERCAMQ5T4B2 595 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 CYP26C1Q6V0L0 522 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 HSCBQ8IWL3 235 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 SLC15A3Q8IY34 581 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 SPARTQ8N0X7 666 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 OTUD6BQ8N6M0 293 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 TTC9BQ8N6N2 239 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 DNAJB14Q8TBM8 379 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 CPT1CQ8TCG5 803 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 ATRIPQ8WXE1 791 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 NACC2Q96BF6 587 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 ADOQ96SZ5 270 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 PRPF18Q99633 342 aaKnown RBP5.34□□□□□ -1.55
CD44-220ENST00000525688 ZCWPW1Q9H0M4 648 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 SLC25A32Q9H2D1 315 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 TP63Q9H3D4 680 aaPredicted RBP5.34□□□□□ -1.55
CD44-220ENST00000525688 ZNF703Q9H7S9 590 aaPredicted RBP5.34□□□□□ -1.55
CD44-220ENST00000525688 GALNT9Q9HCQ5 603 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 ITM2CQ9NQX7 267 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 DNAJB11Q9UBS4 358 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 VPS51Q9UID3 782 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 CNOT11Q9UKZ1 510 aaKnown RBP5.34□□□□□ -1.55
CD44-220ENST00000525688 SSX2IPQ9Y2D8 614 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 TTLL3Q9Y4R7 772 aa5.34□□□□□ -1.55
CD44-220ENST00000525688 FGD6Q6ZV73 1430 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 F5H697 171 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 IRAK2O43187 625 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 RGS10O43665 173 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 CCNT2O60583 730 aaKnown RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 SRGAP2O75044 1071 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 HMMRO75330 724 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 FAM155BO75949 473 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 BAIAP3O94812 1187 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 ITGA2BP08514 1039 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 ARP10275 920 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 CAPN3P20807 821 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 OAS2P29728 719 aaKnown RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 CD6P30203 668 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 BMPR1AP36894 532 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 MAPK9P45984 424 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 SELENOPP49908 381 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 VAV2P52735 878 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 PRKAG1P54619 331 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 BCAT1P54687 386 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 FAM189BP81408 668 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 TIAL1Q01085 375 aaKnown RBP eCLIP5.33□□□□□ -1.56
CD44-220ENST00000525688 BEAN1Q3B7T3 259 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 SPDYE7PQ495Y7 208 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 CD300EQ496F6 205 aaPredicted RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 PREPLQ4J6C6 727 aaPredicted RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 INTS11Q5TA45 600 aaKnown RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 ARHGAP40Q5TG30 622 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 RGS7BPQ6MZT1 257 aaPredicted RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 RPAINQ86UA6 219 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 COLGALT2Q8IYK4 626 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 CENPOQ9BU64 300 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 DDX23Q9BUQ8 820 aaKnown RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 AMBRA1Q9C0C7 1298 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms