RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 RALGAPA1Q6GYQ0 2036 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 A0A0A0MRY4 1105 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 TNFRSF4P43489 277 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 ATXN1P54253 815 aaKnown RBP18.42■□□□□ 0.54
DDX41-217ENST00000515562 CRY1Q16526 586 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 CBWD6Q4V339 395 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 CBWD3Q5JTY5 395 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 CBWD5Q5RIA9 395 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 ANKRD40Q6AI12 368 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 NUDT18Q6ZVK8 323 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 HTR3DQ70Z44 454 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 C11orf74Q86VG3 221 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 RASSF3Q86WH2 238 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 ETFBKMTQ8IXQ9 262 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 ELOA2Q8IYF1 753 aaPredicted RBP18.42■□□□□ 0.54
DDX41-217ENST00000515562 PHTF2Q8N3S3 785 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 CNOT6LQ96LI5 555 aaKnown RBP18.42■□□□□ 0.54
DDX41-217ENST00000515562 CDK5RAP1Q96SZ6 601 aaKnown RBP18.42■□□□□ 0.54
DDX41-217ENST00000515562 ARID3AQ99856 593 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.42■□□□□ 0.542e-8■■□□□ 12.8
DDX41-217ENST00000515562 OSER1Q9NX31 292 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 ARMCX3Q9UH62 379 aaPredicted RBP18.42■□□□□ 0.54
DDX41-217ENST00000515562 DNMT3LQ9UJW3 386 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 COQ4Q9Y3A0 265 aa18.42■□□□□ 0.54
DDX41-217ENST00000515562 A0A1W2PQH9 124 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 TBX18O95935 607 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 RARGP13631 454 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 PMS1P54277 932 aaKnown RBP18.41■□□□□ 0.54
DDX41-217ENST00000515562 RAD23BP54727 409 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 SLC8A3P57103 927 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 YWHAEP62258 255 aaKnown RBP18.41■□□□□ 0.54
DDX41-217ENST00000515562 ANO4Q32M45 955 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 PLK5Q496M5 336 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 C10orf120Q5SQS8 335 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 ARHGAP17Q68EM7 881 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 ZNF276Q8N554 614 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 CCDC33Q8N5R6 958 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 SLC4A11Q8NBS3 891 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 KCNV2Q8TDN2 545 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 ERCC4Q92889 916 aaPredicted RBP18.41■□□□□ 0.54
DDX41-217ENST00000515562 ARRDC1-AS1Q9H2J1 176 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 NMUR1Q9HB89 426 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 METTL14Q9HCE5 456 aaKnown RBP18.41■□□□□ 0.54
DDX41-217ENST00000515562 CLIC5Q9NZA1 410 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 DEC1Q9P2X7 70 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 NAGPAQ9UK23 515 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 USP3Q9Y6I4 520 aa18.41■□□□□ 0.54
DDX41-217ENST00000515562 MYOFQ9NZM1 2061 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 MED19A0JLT2 244 aaPredicted RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 TRIM49BA6NDI0 452 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 SLC30A4O14863 429 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 GREM1O60565 184 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 TULP3O75386 442 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 ALDH1A2O94788 518 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 RHOBTB1O94844 696 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 KLF8O95600 359 aaPredicted RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 CHRM1P11229 460 aaPredicted RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 RALAP11233 206 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 TIE1P35590 1138 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 KIR2DL1P43626 348 aaPredicted RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 MESP2Q0VG99 397 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 CUL2Q13617 745 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 USP39Q53GS9 565 aaKnown RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 EOGTQ5NDL2 527 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 ANO7Q6IWH7 933 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 TRMT11Q7Z4G4 463 aaKnown RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 TMEM25Q86YD3 366 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 ALLCQ8N6M5 410 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 TERB1Q8NA31 727 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 C12orf50Q8NA57 414 aaPredicted RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 IL17RCQ8NAC3 791 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 TXNDC5Q8NBS9 432 aaKnown RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 WBP2Q969T9 261 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 SLC35C1Q96A29 364 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 DHTKD1Q96HY7 919 aaPredicted RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 CEP63Q96MT8 703 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 UBXN6Q9BZV1 441 aa18.4■□□□□ 0.54
DDX41-217ENST00000515562 DUSP15Q9H1R2 295 aaPredicted RBP18.4■□□□□ 0.54
DDX41-217ENST00000515562 TBC1D3BA6NDS4 549 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 CACNG3O60359 315 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 ZNF806P0C7X5 589 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 TBXAS1P24557 533 aaPredicted RBP18.39■□□□□ 0.53
DDX41-217ENST00000515562 MPLP40238 635 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 PLA2G4AP47712 749 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 SFTPA1Q8IWL2 248 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 ARHGAP18Q8N392 663 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 NAT16Q8N8M0 369 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 ANKRD52Q8NB46 1076 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 MDGA1Q8NFP4 955 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 TATDN2Q93075 761 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 XPO6Q96QU8 1125 aaKnown RBP18.39■□□□□ 0.53
DDX41-217ENST00000515562 BBS2Q9BXC9 721 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 TPSD1Q9BZJ3 242 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 POLMQ9NP87 494 aaPredicted RBP18.39■□□□□ 0.53
DDX41-217ENST00000515562 MARK1Q9P0L2 795 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 WDR35Q9P2L0 1181 aa18.39■□□□□ 0.53
DDX41-217ENST00000515562 NEDD8-MDP1E9PL57 170 aa18.38■□□□□ 0.53
DDX41-217ENST00000515562 SGK1O00141 431 aa18.38■□□□□ 0.53
DDX41-217ENST00000515562 GBP1P32455 592 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms