RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 C16orf46Q6P387 395 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 POLNQ7Z5Q5 900 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 FAM131BQ86XD5 332 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 SEC14L1Q92503 715 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 C12orf65Q9H3J6 166 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 PIH1D1Q9NWS0 290 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 NDUFA13Q9P0J0 144 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 SUN2Q9UH99 717 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 CHKBQ9Y259 395 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 TCRBV9S1A1TA0A576 114 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 ASB14A6NK59 587 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 AP3B1O00203 1094 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 CHADO15335 359 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 ASMTLO95671 621 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 CYP2C8P10632 490 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 RXRBP28702 533 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 GNL1P36915 607 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 NDST1P52848 882 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 IL1RL1Q01638 556 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 MGAT5Q09328 741 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 ACAP1Q15027 740 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 HABP4Q5JVS0 413 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 TCHHL1Q5QJ38 904 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 TMCO4Q5TGY1 634 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 ZNF772Q68DY9 489 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 CCDC117Q8IWD4 279 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 GDPD5Q8WTR4 605 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 NRBF2Q96F24 287 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 ELMO2Q96JJ3 720 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 GSTA4O15217 222 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 GSC2O15499 205 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 ATICP31939 592 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 GMPSP49915 693 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 WDR4P57081 412 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 TGFB2P61812 414 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 TMEM62Q0P6H9 643 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 PDCD2Q16342 344 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 OLFML2BQ68BL8 750 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 STRA8Q7Z7C7 330 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 ALYREFQ86V81 257 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 MYLK4Q86YV6 388 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 COLGALT1Q8NBJ5 622 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 PPHLN1Q8NEY8 458 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC7A14Q8TBB6 771 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 PYDC1Q8WXC3 89 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 TBCBQ99426 244 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 AP5M1Q9H0R1 490 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 DENND2DQ9H6A0 471 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 NMRK1Q9NWW6 199 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 BARX2Q9UMQ3 279 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 NUP188Q5SRE5 1749 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 LIN7AO14910 233 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 AKAP10O43572 662 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 SEC24DO94855 1032 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 IL10P22301 178 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 ADSSP30520 456 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 TNFSF9P41273 254 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 RTP1P59025 263 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 MMRN1Q13201 1228 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 C15orf59Q2T9L4 293 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 BNC2Q6ZN30 1099 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 NMD3Q96D46 503 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 SGF29Q96ES7 293 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 CCT7Q99832 543 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 TMEM134Q9H6X4 195 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 LRRC40Q9H9A6 602 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 ETNK2Q9NVF9 386 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 WNT10BO00744 389 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 AVILO75366 819 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 TCEA3O75764 348 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 PROCP04070 461 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 NBPF12Q5TAG4 269 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 C4orf50Q6ZRC1 276 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 SLCO2A1Q92959 643 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 LRRC39Q96DD0 335 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 BORCS6Q96GS4 357 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 CPB2Q96IY4 423 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 CEP41Q9BYV8 373 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 NSMCE4AQ9NXX6 385 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 BAG5Q9UL15 447 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 PIN4Q9Y237 131 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 BAZ2AQ9UIF9 1905 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 E5RJQ4 531 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 PLA2G6O60733 806 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 NPTXRO95502 500 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 TRUB2O95900 331 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 MOCS2O96007 188 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 C4BPAP04003 597 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 S100BP04271 92 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 CYP1A1P04798 512 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 APOA4P06727 396 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 UNGP13051 313 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC25A3Q00325 362 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 CXCL9Q07325 125 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 BLMHQ13867 455 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 CYLC2Q14093 348 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 TMEM259Q4ZIN3 620 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 RNASEH2BQ5TBB1 312 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 THEMIS2Q5TEJ8 643 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 LAYNQ6UX15 382 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms