RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 RAD51AP1Q96B01 352 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ERP27Q96DN0 273 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ARHGEF26Q96DR7 871 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TCEAL4Q96EI5 215 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CERS2Q96G23 380 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TRIM54Q9BYV2 358 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ZC3H12CQ9C0D7 883 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 EPB41L1Q9H4G0 881 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TRABDQ9H4I3 376 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TMEM206Q9H813 350 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 NOL11Q9H8H0 719 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 CLK4Q9HAZ1 481 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 EXOSC4Q9NPD3 245 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 NMRK2Q9NPI5 230 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 HPS4Q9NQG7 708 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 RGS18Q9NS28 235 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 NMRK1Q9NWW6 199 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TBC1D7Q9P0N9 293 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 DBF4Q9UBU7 674 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 VANGL2Q9ULK5 521 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PADI4Q9UM07 663 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 COL4A3BPQ9Y5P4 624 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 RAD54BQ9Y620 910 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 NEDD4P46934 1319 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CDHR2Q9BYE9 1310 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PCDH11YQ9BZA8 1340 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TECPR2O15040 1411 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 GLTPD2A6NH11 291 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CASC3O15234 703 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 PGK1P00558 417 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 GSTT2BP0CG30 244 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 HOXB8P17481 243 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 PTPREP23469 700 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 STOMP27105 288 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 MAPK4P31152 587 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SDC2P34741 201 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CAPGP40121 348 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ARL4AP40617 200 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 HNF4AP41235 474 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 RCAN1P53805 252 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 EHHADHQ08426 723 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 BNIP2Q12982 314 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 DSG2Q14126 1118 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CLEC16AQ2KHT3 1053 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PLEKHG6Q3KR16 790 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SPATS1Q496A3 300 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 USP39Q53GS9 565 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 KCNT1Q5JUK3 1230 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SPDYAQ5MJ70 313 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TMTC4Q5T4D3 741 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 KLHL24Q6TFL4 600 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 C4orf50Q6ZRC1 276 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TTC6Q86TZ1 520 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SAPCD2Q86UD0 394 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 RASAL3Q86YV0 1011 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CBWD2Q8IUF1 395 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 DHRSXQ8N5I4 330 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ARL6IP6Q8N6S5 226 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ZBTB38Q8NAP3 1195 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 TSPAN14Q8NG11 270 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 OR4C6Q8NH72 309 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PPP1R13LQ8WUF5 828 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SYN2Q92777 582 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 CORO2AQ92828 525 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 AKT1S1Q96B36 256 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 MAGEB10Q96LZ2 347 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 EHD4Q9H223 541 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 EXO5Q9H790 373 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CATSPERZQ9NTU4 200 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PRPF19Q9UMS4 504 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 MGAT4BQ9UQ53 548 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CLEC11AQ9Y240 323 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 EXOC6BQ9Y2D4 811 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 FMN2Q9NZ56 1722 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 H7C0C1 242 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 MUSKO15146 869 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 AIREO43918 545 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 KRT36O76013 467 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ASMTLO95671 621 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 FOSL2P15408 326 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PRKACAP17612 351 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ALOX12P18054 663 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TGM2P21980 687 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 ATP5OP48047 213 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CDK7P50613 346 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 RAB5CP51148 216 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 TPTEP56180 551 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 KCNK10P57789 538 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PITPNAQ00169 270 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 C2orf54Q08AI8 447 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 MAD2L1Q13257 205 aaPredicted RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 MPP3Q13368 585 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 PON3Q15166 354 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 MAPRE1Q15691 268 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 TMEM44Q2T9K0 475 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 CNPY1Q3B7I2 92 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SLC45A4Q5BKX6 768 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 GNASQ5JWF2 1037 aa3.68□□□□□ -1.82
USP53-205ENST00000509769 SPOUT1Q5T280 376 aaKnown RBP3.68□□□□□ -1.82
USP53-205ENST00000509769 STYK1Q6J9G0 422 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms