RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ARHGEF3Q9NR81 526 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 SYBUQ9NX95 663 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 LRIT1Q9P2V4 623 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 LPAR3Q9UBY5 353 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 GABRQQ9UN88 632 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 CCDC151A5D8V7 595 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 HMX3A6NHT5 357 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 KRTAP9-7A8MTY7 169 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 A8MVJ9 347 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 M0R3H8 397 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 IRAK2O43187 625 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 DHHO43323 396 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 CBFA2T3O75081 653 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 PMPCBO75439 489 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 TAF5LO75529 589 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 ACTL6BO94805 426 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 ZNF202O95125 648 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 CREB1P16220 341 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 KLRK1P26718 216 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 MPLP40238 635 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 PBX1P40424 430 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 DGKQP52824 942 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 TPTEP56180 551 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 SUMO2P61956 95 aaKnown RBP4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 AP2B1P63010 937 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 GRM4Q14833 912 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 TAF5Q15542 800 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 P3H1Q32P28 736 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 TBC1D25Q3MII6 688 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 USP51Q70EK9 711 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 PARS2Q7L3T8 475 aaKnown RBP4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 WDR53Q7Z5U6 358 aaPredicted RBP4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 ANKRD18AQ8IVF6 992 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 SLC44A2Q8IWA5 706 aaPredicted RBP4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 SIRT6Q8N6T7 355 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 RP9Q8TA86 221 aaKnown RBP4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 VPS50Q96JG6 964 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 ZNF747Q9BV97 191 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 PABPC3Q9H361 631 aaKnown RBP4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 MLXIPQ9HAP2 919 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 SAYSD1Q9NPB0 183 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 FSCN3Q9NQT6 498 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 PRDM8Q9NQV8 689 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 SERTAD4Q9NUC0 356 aa4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 EPN1Q9Y6I3 576 aaPredicted RBP4.69□□□□□ -1.66
HMGB1P28-201ENST00000507778 AP4M1O00189 453 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 SPRY2O43597 315 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 ORC4O43929 436 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 URI1O94763 535 aaPredicted RBP4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 TTLL1O95922 423 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 ADH4P08319 380 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 AKT1P31749 480 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 MCM7P33993 719 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 GRIA3P42263 894 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 GSTM5P46439 218 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 SEC24CP53992 1094 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 PNLIPRP1P54315 467 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 E2F1Q01094 437 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 MTAPQ13126 283 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 CYP1B1Q16678 543 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 TMEM196Q5HYL7 178 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 Q6YL49 198 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 Q6ZWC4 215 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 NGDNQ8NEJ9 315 aaKnown RBP4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 CTHRC1Q96CG8 243 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 GCC1Q96CN9 775 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 WDYHV1Q96HA8 205 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 PRR25Q96S07 402 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 EIF3CQ99613 913 aaKnown RBP4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 DDX23Q9BUQ8 820 aaKnown RBP4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 BRD8Q9H0E9 1235 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 KIF17Q9P2E2 1029 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 MGAT4CQ9UBM8 478 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 SRP68Q9UHB9 627 aaKnown RBP4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 NFU1Q9UMS0 254 aa4.68□□□□□ -1.66
HMGB1P28-201ENST00000507778 EFCAB8A8MWE9 144 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 QSOX1O00391 747 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 CES2O00748 559 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 TJP3O95049 919 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 FAM163BP0C2L3 166 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 INSRRP14616 1297 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 JUPP14923 745 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 NDUFB7P17568 137 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 DRD1P21728 446 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 CST5P28325 142 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 CTGFP29279 349 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 CYP2C18P33260 490 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 ADRA1BP35368 520 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 BUD31P41223 144 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 FOXI1Q12951 378 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 BFSP2Q13515 415 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 KCNJ12Q14500 433 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 IGFL4Q6B9Z1 124 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 NFRKBQ6P4R8 1299 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 MTHFD1LQ6UB35 978 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 DPY19L3Q6ZPD9 716 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 RAB11FIP2Q7L804 512 aa4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 PEG10Q86TG7 708 aaKnown RBP4.67□□□□□ -1.66
HMGB1P28-201ENST00000507778 MOGAT3Q86VF5 341 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms