RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, human

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC4-223	ENST00000493695	hCG_2014768	A0A024R1R8	64 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695		H7C4K7	107 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	CNOT3	O75175	753 aa	Known RBP	5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	THBS4	P35443	961 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	GATM	P50440	423 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	HYAL1	Q12794	435 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	PELI3	Q8N2H9	469 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	TMEM199	Q8N511	208 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	C12orf76	Q8N812	135 aa	Predicted RBP	5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	STAG1	Q8WVM7	1258 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	ASB5	Q8WWX0	329 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	SPSB4	Q96A44	273 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	HIC2	Q96JB3	615 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	NUP88	Q99567	741 aa	Predicted RBP	5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	STK31	Q9BXU1	1019 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	HOMER2	Q9NSB8	354 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	ZBTB40	Q9NUA8	1239 aa		5.08	□□□□□ -1.6
SMC4-223	ENST00000493695	PIAS2	O75928	621 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	CD19	P15391	556 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	ATF7	P17544	494 aa	Predicted RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	SLC7A1	P30825	629 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	PTDSS1	P48651	473 aa	Known RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	IGBP1	P78318	339 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	TXNL4A	P83876	142 aa	Known RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	PPAT	Q06203	517 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	ADHFE1	Q8IWW8	467 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	ANKRD13A	Q8IZ07	590 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	DCP1B	Q8IZD4	617 aa	Known RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	DIS3L	Q8TF46	1054 aa	Known RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	TRMT61A	Q96FX7	289 aa	Known RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	CAMK1G	Q96NX5	476 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	TMEM204	Q9BSN7	226 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	TRIM5	Q9C035	493 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	ZNF518B	Q9C0D4	1074 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	NUAK2	Q9H093	628 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	ZMAT3	Q9HA38	289 aa	Known RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	SEMA4B	Q9NPR2	832 aa	Predicted RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	A1CF	Q9NQ94	594 aa	Known RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	SACM1L	Q9NTJ5	587 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	ASAP1	Q9ULH1	1129 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	COG5	Q9UP83	839 aa		5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	SIRT4	Q9Y6E7	314 aa	Predicted RBP	5.07	□□□□□ -1.6
SMC4-223	ENST00000493695	LOC102723971	A0A1B0GUV8	181 aa		5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	CD3EAP	O15446	510 aa	Known RBP	5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	ZC3H11A	O75152	810 aa	Known RBP eCLIP	5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	UBXN7	O94888	489 aa		5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	MYB	P10242	640 aa		5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	DEUP1	Q05D60	604 aa		5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	P3H2	Q8IVL5	708 aa		5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	KRT78	Q8N1N4	520 aa		5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	WDYHV1	Q96HA8	205 aa		5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	DECR2	Q9NUI1	292 aa		5.06	□□□□□ -1.6
SMC4-223	ENST00000493695	RAB27B	O00194	218 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	NDUFB8	O95169	186 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	ARFIP2	P53365	341 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	ANAPC15	P60006	121 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	C18orf65	Q6ZTR6	163 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	USP43	Q70EL4	1123 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	OR56A3	Q8NH54	315 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	PPP1R35	Q8TAP8	253 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	SMCR8	Q8TEV9	937 aa	Predicted RBP	5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	PIGK	Q92643	395 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	HOOK2	Q96ED9	719 aa		5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	DDX56	Q9NY93	547 aa	Known RBP	5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	DNMT3B	Q9UBC3	853 aa	Known RBP	5.05	□□□□□ -1.6
SMC4-223	ENST00000493695	C2CD4B	A6NLJ0	364 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	C4orf47	A7E2U8	309 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	PHGDH	O43175	533 aa	Known RBP	5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	CA12	O43570	354 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	RRP9	O43818	475 aa	Known RBP	5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	SNX2	O60749	519 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	PLAU	P00749	431 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	NGFR	P08138	427 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	ZKSCAN1	P17029	563 aa	Predicted RBP	5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	HSPA6	P17066	643 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	MCM5	P33992	734 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	ALDH7A1	P49419	539 aa	Known RBP	5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	MTA1	Q13330	715 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	BRDT	Q58F21	947 aa	Predicted RBP	5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	ZNF628	Q5EBL2	1059 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	LCE1E	Q5T753	118 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	CLEC9A	Q6UXN8	241 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	FAM57B	Q71RH2	274 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	PNPLA1	Q8N8W4	532 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	EDC3	Q96F86	508 aa	Known RBP	5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	TM2D2	Q9BX73	214 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	XPNPEP3	Q9NQH7	507 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	ANAPC4	Q9UJX5	808 aa		5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	HEMK1	Q9Y5R4	338 aa	Predicted RBP	5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	TRIP12	Q14669	1992 aa	Predicted RBP	5.04	□□□□□ -1.6
SMC4-223	ENST00000493695	TTBK1	Q5TCY1	1321 aa	Predicted RBP	5.03	□□□□□ -1.6
SMC4-223	ENST00000493695	TMEM272	A0A1B0GTI8	110 aa		5.03	□□□□□ -1.6
SMC4-223	ENST00000493695	PYCARD-AS1	I3L0S3	204 aa		5.03	□□□□□ -1.6
SMC4-223	ENST00000493695	CTIF	O43310	598 aa	Known RBP	5.03	□□□□□ -1.6
SMC4-223	ENST00000493695	SLC28A2	O43868	658 aa		5.03	□□□□□ -1.6
SMC4-223	ENST00000493695	USP12	O75317	370 aa		5.03	□□□□□ -1.6
SMC4-223	ENST00000493695	PARP1	P09874	1014 aa	Known RBP	5.03	□□□□□ -1.6
SMC4-223	ENST00000493695	ADRA1D	P25100	572 aa		5.03	□□□□□ -1.6
SMC4-223	ENST00000493695	NTSR1	P30989	418 aa		5.03	□□□□□ -1.6
SMC4-223	ENST00000493695	NEK2	P51955	445 aa		5.03	□□□□□ -1.6

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