RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 UNC5CO95185 931 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CBX6O95503 412 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 EDN1P05305 212 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 JAM2P57087 298 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PTENP60484 403 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LBRQ14739 615 aaKnown RBP11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KBTBD12Q3ZCT8 623 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 OLFML1Q6UWY5 402 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CTU1Q7Z7A3 348 aaKnown RBP11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PDIK1LQ8N165 341 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LRRC43Q8N309 656 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KCTD17Q8N5Z5 321 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 STKLD1Q8NE28 680 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NPLOC4Q8TAT6 608 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SLC7A14Q8TBB6 771 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MTBPQ96DY7 904 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LRGUKQ96M69 825 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NR1H4Q96RI1 486 aaPredicted RBP11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 THTPAQ9BU02 230 aa11.15□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 B2RBV5 119 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 VNN1O95497 513 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 EIF4BP23588 611 aaKnown RBP11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FLT3LGP49771 235 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SLC34A1Q06495 639 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TRIP10Q15642 601 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZNF484Q5JVG2 852 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SH3PXD2AQ5TCZ1 1133 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MTHFD1LQ6UB35 978 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C1orf127Q8N9H9 656 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MFSD14AQ96MC6 490 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RNF39Q9H2S5 420 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 UBP1Q9NZI7 540 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 STRIP2Q9ULQ0 834 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PHTF1Q9UMS5 762 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CCDC195A0A1B0GUA6 201 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MICAL2O94851 1124 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PROSCO94903 275 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 INHBAP08476 426 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LINGO3P0C6S8 592 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MAMLD1Q13495 774 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TXNRD3NBQ6F5E7 133 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FAM228AQ86W67 206 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 AGR3Q8TD06 166 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FAM172AQ8WUF8 416 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C12orf42Q96LP6 360 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ABI2Q9NYB9 513 aaPredicted RBP11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CLIC5Q9NZA1 410 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZNF112Q9UJU3 913 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LRFN2Q9ULH4 789 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TMCO1Q9UM00 188 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NEU2Q9Y3R4 380 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NFASCO94856 1347 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CITO14578 2027 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MT-ND3P03897 115 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C4BPAP04003 597 aaKnown RBP11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NCAM1P13591 858 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PTPN4P29074 926 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ARL2P36404 184 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 USP46P62068 366 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KCTD21Q4G0X4 260 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MDH1BQ5I0G3 518 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C1orf220Q5T0J3 134 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TLDC1Q6P9B6 456 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZPBP2Q6X784 338 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TRMT10CQ7L0Y3 403 aaKnown RBP11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ACTRT1Q8TDG2 376 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PGM2Q96G03 612 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SNF8Q96H20 258 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MAML3Q96JK9 1138 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TBC1D10AQ9BXI6 508 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 HAPLN2Q9GZV7 340 aa11.14□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CYB561D2O14569 222 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 STRNO43815 780 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ATP9BO43861 1147 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ENO1P06733 434 aaKnown RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SULT1E1P49888 294 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SCNN1GP51170 649 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ASPHQ12797 758 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CYTH1Q15438 398 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SDHAF4Q5VUM1 108 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TRIM72Q6ZMU5 477 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NLRP9Q7RTR0 991 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CCNJLQ8IV13 435 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GPR152Q8TDT2 470 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ATXN2LQ8WWM7 1075 aaKnown RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SREK1Q8WXA9 508 aaKnown RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TWNKQ96RR1 684 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CPXM1Q96SM3 734 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZNF184Q99676 751 aaPredicted RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TRABDQ9H4I3 376 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 IL1RAPL1Q9NZN1 696 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 WDR35Q9P2L0 1181 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TSR3Q9UJK0 312 aaKnown RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NR1H3Q13133 447 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NFIL3Q16649 462 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TAF1BQ53T94 588 aaPredicted RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TTC8Q8TAM2 541 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NSL1Q96IY1 281 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TRIM56Q9BRZ2 755 aaKnown RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MYLK2Q9H1R3 596 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms