RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	CCDC86	Q9H6F5	360 aa	Known RBP	18.72	■□□□□ 0.59
NUP50-218	ENST00000493456	DMAP1	Q9NPF5	467 aa	Predicted RBP	18.72	■□□□□ 0.59
NUP50-218	ENST00000493456	CHORDC1	Q9UHD1	332 aa	Predicted RBP	18.72	■□□□□ 0.59
NUP50-218	ENST00000493456	APOBEC2	Q9Y235	224 aa	Known RBP	18.72	■□□□□ 0.59
NUP50-218	ENST00000493456	GFRA2	O00451	464 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	TRIM24	O15164	1050 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	EIF3D	O15371	548 aa	Known RBP eCLIP	18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	IRF1	P10914	325 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	ATIC	P31939	592 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	GRIK2	Q13002	908 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	TRPC3	Q13507	836 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	PSMD6	Q15008	389 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	CCNI2	Q6ZMN8	369 aa	Predicted RBP	18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	GLRX5	Q86SX6	157 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	PDZD3	Q86UT5	571 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	FAM35A	Q86V20	835 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	SYAP1	Q96A49	352 aa	Predicted RBP	18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	SMARCD1	Q96GM5	515 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	MRGPRX1	Q96LB2	322 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	KCNK16	Q96T55	309 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	ACOX2	Q99424	681 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	MARK1	Q9P0L2	795 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	GMIP	Q9P107	970 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	WDR35	Q9P2L0	1181 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	NFE2L3	Q9Y4A8	694 aa		18.71	■□□□□ 0.59
NUP50-218	ENST00000493456	VPS37C	A5D8V6	355 aa	Predicted RBP	18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	NEDD8-MDP1	E9PL57	170 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	CD2BP2	O95400	341 aa	Known RBP	18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	TYR	P14679	529 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	CYP24A1	Q07973	514 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	GOLGA8F	Q08AF8	430 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	GOLGA8DP	Q0D2H9	430 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	C8orf34	Q49A92	452 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	HTR3D	Q70Z44	454 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	TNIP3	Q96KP6	325 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	MED10	Q9BTT4	135 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	BBS2	Q9BXC9	721 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	LRRC27	Q9C0I9	530 aa		18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	18.7	■□□□□ 0.58	9e-9	■■■■■ 111.8
NUP50-218	ENST00000493456	NXF1	Q9UBU9	619 aa	Known RBP	18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	LSM7	Q9UK45	103 aa	Known RBP	18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	MORC2	Q9Y6X9	1032 aa	Predicted RBP	18.7	■□□□□ 0.58
NUP50-218	ENST00000493456	TLR5	O60602	858 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	CD6	P30203	668 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	C19orf48	Q6RUI8	117 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	METTL3	Q86U44	580 aa	Known RBP	18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	RDH13	Q8NBN7	331 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	GLIS3	Q8NEA6	775 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	WBP2	Q969T9	261 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	CCDC127	Q96BQ5	260 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	XYLT2	Q9H1B5	865 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	TNMD	Q9H2S6	317 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	FBXO44	Q9H4M3	255 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	VRTN	Q9H8Y1	702 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456	AGPAT3	Q9NRZ7	376 aa		18.69	■□□□□ 0.58
NUP50-218	ENST00000493456		A0A087X0B3	334 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456		A0A1B0GTW7	788 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	PRRT4	C9JH25	899 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	GREM1	O60565	184 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	ZNF883	P0CG24	379 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	HOXD13	P35453	343 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	DGKG	P49619	791 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	MYL6	P60660	151 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	SNRPF	P62306	86 aa	Known RBP	18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	COL28A1	Q2UY09	1125 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	SOWAHC	Q53LP3	525 aa	Predicted RBP	18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	KIAA1324	Q6UXG2	1013 aa	Known RBP	18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	TOGARAM2	Q6ZUX3	1019 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	PNPLA1	Q8N8W4	532 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	XXYLT1	Q8NBI6	393 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	DNASE2B	Q8WZ79	361 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	TLR8	Q9NR97	1041 aa	Known RBP	18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	CACNA2D2	Q9NY47	1150 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	KIAA1522	Q9P206	1035 aa	Predicted RBP	18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	PCOLCE2	Q9UKZ9	415 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	RAD54B	Q9Y620	910 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	UBE4B	O95155	1302 aa		18.68	■□□□□ 0.58
NUP50-218	ENST00000493456	MEI4	A8MW99	385 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	CBFA2T3	O75081	653 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	AP1G2	O75843	785 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	PDC	P20941	246 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	ZNF132	P52740	706 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	STARD3	Q14849	445 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	TPGS1	Q6ZTW0	290 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	PAQR9	Q6ZVX9	377 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	EPM2AIP1	Q7L775	607 aa	Predicted RBP	18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	CADM4	Q8NFZ8	388 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	ZNF507	Q8TCN5	953 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	KLF16	Q9BXK1	252 aa	Predicted RBP	18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	PANK2	Q9BZ23	570 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	SLC6A17	Q9H1V8	727 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	SMYD3	Q9H7B4	428 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	CD93	Q9NPY3	652 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	CYLD	Q9NQC7	956 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	KRT82	Q9NSB4	513 aa		18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	USP36	Q9P275	1121 aa	Known RBP	18.67	■□□□□ 0.58
NUP50-218	ENST00000493456	NPC1	O15118	1278 aa		18.66	■□□□□ 0.58
NUP50-218	ENST00000493456	TGFB1I1	O43294	461 aa		18.66	■□□□□ 0.58
NUP50-218	ENST00000493456	PHACTR2	O75167	634 aa		18.66	■□□□□ 0.58
NUP50-218	ENST00000493456	CER1	O95813	267 aa		18.66	■□□□□ 0.58

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