RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 MICU2Q8IYU8 434 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 ATP13A1Q9HD20 1204 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 CCDC189A1A4V9 331 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 MEI4A8MW99 385 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 RENBPP51606 427 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 FBXO38Q6PIJ6 1188 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 FAM131BQ86XD5 332 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 CBWD2Q8IUF1 395 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 KLHL28Q9NXS3 571 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 STMN3Q9NZ72 180 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 AHSPQ9NZD4 102 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 SH3BP4Q9P0V3 963 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 ADGRG1Q9Y653 693 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 RPA1P27694 616 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 CTCFP49711 727 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-212ENST00000491769 SETMARQ53H47 684 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-212ENST00000491769 KCNT1Q5JUK3 1230 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 MIIPQ5JXC2 388 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 MTERF3Q96E29 417 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 HTATIP2Q9BUP3 242 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 UBE2OQ9C0C9 1292 aaKnown RBP13.53□□□□□ -0.24
COL6A3-212ENST00000491769 UBP1Q9NZI7 540 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 SAE1Q9UBE0 346 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-212ENST00000491769 KLHL20Q9Y2M5 609 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 IFNA16P05015 189 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 CYP24A1Q07973 514 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 EDRF1Q3B7T1 1238 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 CYP20A1Q6UW02 462 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 ABCG4Q9H172 646 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 ZDHHC6Q9H6R6 413 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 ACTR8Q9H981 624 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 RFX7Q2KHR2 1363 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 NTSR2O95665 410 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 IGSF6O95976 241 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 CHN1P15882 459 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 CYP11B2P19099 503 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 PPP2R1BP30154 601 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 MRPL17Q9NRX2 175 aaKnown RBP13.53□□□□□ -0.24
COL6A3-212ENST00000491769 SOX13Q9UN79 622 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 PPP2R3BQ9Y5P8 575 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 M0R3G1 203 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 TPST1O60507 370 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 OR6A2O95222 327 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 ACAT1P24752 427 aaKnown RBP13.53□□□□□ -0.24
COL6A3-212ENST00000491769 OR1E1P30953 314 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 E2F7Q96AV8 911 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 BBS4Q96RK4 519 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 SPATC1LQ9H0A9 340 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 IL1RAPL1Q9NZN1 696 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 FLT3P36888 993 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 SEMA3FQ13275 785 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 PPIL2Q13356 520 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 SYT15Q9BQS2 421 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 LRRC1Q9BTT6 524 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 PLA2G12BQ9BX93 195 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 FBXO44Q9H4M3 255 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 ARHGEF3Q9NR81 526 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 COQ6Q9Y2Z9 468 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 USP42Q9H9J4 1324 aaKnown RBP13.52□□□□□ -0.24
COL6A3-212ENST00000491769 PEX1O43933 1283 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 HERVK_113P62684 666 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 ILDR2Q71H61 639 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 SCAIQ8N9R8 606 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 SPATA4Q8NEY3 305 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 RGS18Q9NS28 235 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.52□□□□□ -0.24
COL6A3-212ENST00000491769 TNFSF13BQ9Y275 285 aa13.52□□□□□ -0.24
COL6A3-212ENST00000491769 KATNA1O75449 491 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 USP1O94782 785 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 AGTP01019 485 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 ALBP02768 609 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 ADORA2AP29274 412 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 CLK2P49760 499 aaKnown RBP13.52□□□□□ -0.25
COL6A3-212ENST00000491769 CSNK2BP67870 215 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 E2F4Q16254 413 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 SLC39A12Q504Y0 691 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 MARK2Q7KZI7 788 aaKnown RBP13.52□□□□□ -0.25
COL6A3-212ENST00000491769 LGI2Q8N0V4 545 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 CXorf40AQ8TE69 158 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 RUSC1Q9BVN2 902 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 PXMP2Q9NR77 195 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 PNMA6AP0CW24 399 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-212ENST00000491769 ZNF24P17028 368 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 BARGINQ6ZT62 677 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 AKT1S1Q96B36 256 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 CELF6Q96J87 481 aaKnown RBP13.52□□□□□ -0.25
COL6A3-212ENST00000491769 REXO4Q9GZR2 422 aaKnown RBP13.52□□□□□ -0.25
COL6A3-212ENST00000491769 SPATA31A5Q5VU36 1347 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 SPATA31A7Q8IWB4 1347 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 ERI2A8K979 691 aaKnown RBP13.52□□□□□ -0.25
COL6A3-212ENST00000491769 RGS5O15539 181 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 JCHAINP01591 159 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 RPN2P04844 631 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 C2CD6Q53TS8 623 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 ACAD10Q6JQN1 1059 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 POTEAQ6S8J7 498 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 C17orf75Q9HAS0 396 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 CTNNAL1Q9UBT7 734 aa13.52□□□□□ -0.25
COL6A3-212ENST00000491769 GPN3Q9UHW5 284 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-212ENST00000491769 GPSM3Q9Y4H4 160 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms