RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 USP20Q9Y2K6 914 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 SPTLC1O15269 473 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 ZNF682O95780 498 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 GSNP06396 782 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 SSTR1P30872 391 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 CDC16Q13042 620 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 TBX2Q13207 712 aaPredicted RBP18.14■□□□□ 0.49
NPHP4-209ENST00000489180 PTAR1Q7Z6K3 402 aaPredicted RBP18.14■□□□□ 0.49
NPHP4-209ENST00000489180 TMC2Q8TDI7 906 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 HASPINQ8TF76 798 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 TMEM176AQ96HP8 235 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 MYLK2Q9H1R3 596 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 GPAMQ9HCL2 828 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 NINJ2Q9NZG7 142 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 CPSF4O95639 269 aaKnown RBP18.14■□□□□ 0.49
NPHP4-209ENST00000489180 SARSP49591 514 aaKnown RBP18.14■□□□□ 0.49
NPHP4-209ENST00000489180 MCL1Q07820 350 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 ATP6AP1LQ52LC2 224 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 TXNRD3Q86VQ6 643 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 TMEM79Q9BSE2 394 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 ARMCX1Q9P291 453 aa18.14■□□□□ 0.49
NPHP4-209ENST00000489180 WDR27A2RRH5 827 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 RARAP10276 462 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 MLNP12872 115 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 PKN2Q16513 984 aaKnown RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 ZBTB49Q6ZSB9 765 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 LRRC8DQ7L1W4 858 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 DUSP9Q99956 384 aaKnown RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 CNPY3Q9BT09 278 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 CAP2P40123 477 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 ZNF177Q13360 481 aaPredicted RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 MPP3Q13368 585 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 NAIF1Q69YI7 327 aaPredicted RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 POU5F2Q8N7G0 328 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 CYP2W1Q8TAV3 490 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 RTFDC1Q9BY42 306 aaPredicted RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 ZNF518BQ9C0D4 1074 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 VPS26AO75436 327 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 GJB6O95452 261 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 GUCA1CO95843 209 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 CSTF3Q12996 717 aaKnown RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 GNASQ5JWF2 1037 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 PACS2Q86VP3 889 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 CCDC126Q96EE4 140 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 PNMA5Q96PV4 448 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 PARK7Q99497 189 aaKnown RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 AGO4Q9HCK5 861 aaKnown RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 ACOT9Q9Y305 439 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 CBX6O95503 412 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 CXCL8P10145 99 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 GHRP10912 638 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 POU1F1P28069 291 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 PEX5P50542 639 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 FBXO16Q8IX29 292 aaPredicted RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 ABRAQ8N0Z2 381 aa18.13■□□□□ 0.49
NPHP4-209ENST00000489180 MRPL42Q9Y6G3 142 aaKnown RBP18.13■□□□□ 0.49
NPHP4-209ENST00000489180 RRN3P2A6NIE6 340 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 WASHC5Q12768 1159 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 TRAF2Q12933 501 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 ANGPT1Q15389 498 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 PLEKHA7Q6IQ23 1121 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 AADACL2Q6P093 401 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 ISLR2Q6UXK2 745 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 TRIM69Q86WT6 500 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 GDF3Q9NR23 364 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 KCNH4Q9UQ05 1017 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 SPATA31A1Q5TZJ5 1347 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 C17orf102A2RUQ5 167 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 B3GAT3O94766 335 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 PECAM1P16284 738 aaPredicted RBP18.12■□□□□ 0.49
NPHP4-209ENST00000489180 CHI3L1P36222 383 aaPredicted RBP18.12■□□□□ 0.49
NPHP4-209ENST00000489180 NCALDP61601 193 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 ITGA9Q13797 1035 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 HEATR4Q86WZ0 1026 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 RNF148Q8N7C7 305 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 GDPD5Q8WTR4 605 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 PHF21BQ96EK2 531 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 SYNDIG1Q9H7V2 258 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 C10orf88Q9H8K7 445 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.12■□□□□ 0.49
NPHP4-209ENST00000489180 KRT87PA6NCN2 255 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 FCHO1O14526 889 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 ALDH1A3P47895 512 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 HIST2H2ACQ16777 129 aaPredicted RBP18.12■□□□□ 0.49
NPHP4-209ENST00000489180 HIST2H2AA3Q6FI13 130 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 WDR48Q8TAF3 677 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 MTERF3Q96E29 417 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 CELF6Q96J87 481 aaKnown RBP18.12■□□□□ 0.49
NPHP4-209ENST00000489180 NUDT12Q9BQG2 462 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 BTBD10Q9BSF8 475 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 SCUBE2Q9NQ36 999 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 CACNA2D2Q9NY47 1150 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 CTNNAL1Q9UBT7 734 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 VANGL2Q9ULK5 521 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 ERI2A8K979 691 aaKnown RBP18.12■□□□□ 0.49
NPHP4-209ENST00000489180 INTS5Q6P9B9 1019 aaKnown RBP18.12■□□□□ 0.49
NPHP4-209ENST00000489180 CES3Q6UWW8 571 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 WDR49Q8IV35 697 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 OXNAD1Q96HP4 312 aaPredicted RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms