RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FAM187BQ17R55 369 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 TTC39BQ5VTQ0 682 aaPredicted RBP18.66■□□□□ 0.58
VIM-206ENST00000487938 SLC26A11Q86WA9 606 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 KIF12Q96FN5 646 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 ACAP3Q96P50 834 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 NUDCD1Q96RS6 583 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 MIPEPQ99797 713 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 MECRQ9BV79 373 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 SNRNP25Q9BV90 132 aaKnown RBP18.66■□□□□ 0.58
VIM-206ENST00000487938 B3GNT5Q9BYG0 378 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 NFKBIZQ9BYH8 718 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 DENND2DQ9H6A0 471 aaPredicted RBP18.66■□□□□ 0.58
VIM-206ENST00000487938 RNPEPL1Q9HAU8 725 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 SAR1AQ9NR31 198 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 ETNK2Q9NVF9 386 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 TRAFD1O14545 582 aaPredicted RBP18.65■□□□□ 0.58
VIM-206ENST00000487938 COPEO14579 308 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 CALB2P22676 271 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 BOLA3Q53S33 107 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 RFWD3Q6PCD5 774 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 TTC30AQ86WT1 665 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 NLRP7Q8WX94 980 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 SRPK1Q96SB4 655 aaKnown RBP18.65■□□□□ 0.58
VIM-206ENST00000487938 MRPL45Q9BRJ2 306 aaKnown RBP18.65■□□□□ 0.58
VIM-206ENST00000487938 SLC13A1Q9BZW2 595 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 PLAC1Q9HBJ0 212 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 SMYD2Q9NRG4 433 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 RNF19AQ9NV58 838 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 HAUS5O94927 633 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 OSBPP22059 807 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 SERPINB4P48594 390 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 BMPR2Q13873 1038 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 PDK2Q15119 407 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 OLFML1Q6UWY5 402 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 CHSY1Q86X52 802 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 KHSRPQ92945 711 aaKnown RBP eCLIP18.65■□□□□ 0.58
VIM-206ENST00000487938 IQCGQ9H095 443 aaKnown RBP18.65■□□□□ 0.58
VIM-206ENST00000487938 POPDC2Q9HBU9 364 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 LNPEPQ9UIQ6 1025 aa18.65■□□□□ 0.58
VIM-206ENST00000487938 FAM237BA0A1B0GVD1 139 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 GABBR2O75899 941 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 LGALS2P05162 132 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 DLDP09622 509 aaKnown RBP18.64■□□□□ 0.57
VIM-206ENST00000487938 ZNF286BP0CG31 522 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 GNAZP19086 355 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 SDC4P31431 198 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 ATXN1P54253 815 aaKnown RBP18.64■□□□□ 0.57
VIM-206ENST00000487938 ZNF484Q5JVG2 852 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 STK32AQ8WU08 396 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 MIEF2Q96C03 454 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 CADM1Q9BY67 442 aaKnown RBP18.64■□□□□ 0.57
VIM-206ENST00000487938 PNPLA8Q9NP80 782 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 CNTN3Q9P232 1028 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 ITGA11Q9UKX5 1188 aa18.64■□□□□ 0.57
VIM-206ENST00000487938 PPEF2O14830 753 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 SPAG6O75602 509 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 TPBGLP0DKB5 382 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 MYL2P10916 166 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 TGM2P21980 687 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 SPDYAQ5MJ70 313 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 KLC2Q9H0B6 622 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 SNX9Q9Y5X1 595 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 NR2E3Q9Y5X4 410 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 MAD1L1Q9Y6D9 718 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 METTL18O95568 372 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 SNRPAP09012 282 aaKnown RBP18.63■□□□□ 0.57
VIM-206ENST00000487938 CDK16Q00536 496 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 SLC6A3Q01959 620 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 ARHGAP1Q07960 439 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 SLC9A4Q6AI14 798 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 SMYD5Q6GMV2 418 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 BZW1Q7L1Q6 419 aaKnown RBP18.63■□□□□ 0.57
VIM-206ENST00000487938 TTC7BQ86TV6 843 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 MPP5Q8N3R9 675 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 CLEC4CQ8WTT0 213 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 PTCD3Q96EY7 689 aaKnown RBP18.63■□□□□ 0.57
VIM-206ENST00000487938 NSL1Q96IY1 281 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 ZNF395Q9H8N7 513 aaPredicted RBP18.63■□□□□ 0.57
VIM-206ENST00000487938 KIAA1257Q9ULG3 409 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 MTO1Q9Y2Z2 717 aaKnown RBP18.63■□□□□ 0.57
VIM-206ENST00000487938 NME7Q9Y5B8 376 aa18.63■□□□□ 0.57
VIM-206ENST00000487938 BCLAF3A2AJT9 711 aaKnown RBP18.62■□□□□ 0.57
VIM-206ENST00000487938 F5H423 210 aaPredicted RBP18.62■□□□□ 0.57
VIM-206ENST00000487938 CYB561D2O14569 222 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 PAPSS1O43252 624 aaPredicted RBP18.62■□□□□ 0.57
VIM-206ENST00000487938 HCRTO43612 131 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 TSPAN1O60635 241 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 KRT37O76014 449 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 DDNO94850 711 aaPredicted RBP18.62■□□□□ 0.57
VIM-206ENST00000487938 HDAC4P56524 1084 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 POU5F1BQ06416 359 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 SLC10A2Q12908 348 aaPredicted RBP18.62■□□□□ 0.57
VIM-206ENST00000487938 TAF11Q15544 211 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 C7orf31Q8N865 590 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 MAB21L3Q8N8X9 362 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 ARMC2Q8NEN0 867 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 RTP4Q96DX8 246 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 BTBD10Q9BSF8 475 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 TLE6Q9H808 572 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 TRIP11Q15643 1979 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms