RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 C1QL1O75973 258 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 GLP2RO95838 553 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 NPSP0C0P6 89 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 FAM163BP0C2L3 166 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 MCM5P33992 734 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 SUMO2P61956 95 aaKnown RBP6.26□□□□□ -1.41
USP48-209ENST00000487880 PSG6Q00889 435 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 TBC1D25Q3MII6 688 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 TSTD2Q5T7W7 516 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 PGBD2Q6P3X8 592 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 PTCHD4Q6ZW05 846 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 ZNF804AQ7Z570 1209 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 RASAL3Q86YV0 1011 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 SIRT6Q8N6T7 355 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 ZNF527Q8NB42 609 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 SARAFQ96BY9 339 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 KLK15Q9H2R5 256 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 SEMA4GQ9NTN9 838 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 AMFRQ9UKV5 643 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 INSL6Q9Y581 213 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 NPC1O15118 1278 aa6.25□□□□□ -1.41
USP48-209ENST00000487880 WDR47O94967 919 aa6.25□□□□□ -1.41
USP48-209ENST00000487880 VIPP01282 170 aa6.25□□□□□ -1.41
USP48-209ENST00000487880 FGAP02671 866 aa6.25□□□□□ -1.41
USP48-209ENST00000487880 MYCLP12524 364 aaPredicted RBP6.25□□□□□ -1.41
USP48-209ENST00000487880 EIF4A1P60842 406 aaKnown RBP6.25□□□□□ -1.41
USP48-209ENST00000487880 SPARCL1Q14515 664 aa6.25□□□□□ -1.41
USP48-209ENST00000487880 PUM3Q15397 648 aaKnown RBP6.25□□□□□ -1.41
USP48-209ENST00000487880 KRTAP15-1Q3LI76 137 aa6.25□□□□□ -1.41
USP48-209ENST00000487880 MYLK4Q86YV6 388 aaPredicted RBP6.25□□□□□ -1.41
USP48-209ENST00000487880 SFTPA1Q8IWL2 248 aa6.25□□□□□ -1.41
USP48-209ENST00000487880 FSTL5Q8N475 847 aaPredicted RBP6.25□□□□□ -1.41
USP48-209ENST00000487880 NUDT22Q9BRQ3 303 aa6.25□□□□□ -1.41
USP48-209ENST00000487880 CCNL1Q9UK58 526 aaPredicted RBP6.25□□□□□ -1.41
USP48-209ENST00000487880 MAGED2Q9UNF1 606 aaPredicted RBP6.25□□□□□ -1.41
USP48-209ENST00000487880 POLR2AP24928 1970 aaKnown RBP6.24□□□□□ -1.41
USP48-209ENST00000487880 AQP12BA6NM10 295 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 TMPRSS11DO60235 418 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 NTSR2O95665 410 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 CREB1P16220 341 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 NPPBP16860 134 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 FPR3P25089 353 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 DIO1P49895 249 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 CYP4F2P78329 520 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 ICA1Q05084 483 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 PTK2BQ14289 1009 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 TUBB8Q3ZCM7 444 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 ZACNQ401N2 412 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 FAM153CQ494X1 144 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 AASDHQ4L235 1098 aaPredicted RBP6.24□□□□□ -1.41
USP48-209ENST00000487880 RNASE12Q5GAN4 147 aaKnown RBP6.24□□□□□ -1.41
USP48-209ENST00000487880 PCID2Q5JVF3 399 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 GRHL2Q6ISB3 625 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 TLDC1Q6P9B6 456 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.24□□□□□ -1.41
USP48-209ENST00000487880 FAM71BQ8TC56 605 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 REPS1Q96D71 796 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 PTPRHQ9HD43 1115 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 OBP2BQ9NPH6 170 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 HELLSQ9NRZ9 838 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 ASB6Q9NWX5 421 aa6.24□□□□□ -1.41
USP48-209ENST00000487880 ARPP21Q9UBL0 812 aaPredicted RBP6.24□□□□□ -1.41
USP48-209ENST00000487880 LGALS16A8MUM7 142 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 SYT5O00445 386 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 PIP5K1BO14986 540 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 ZSCAN9O15535 394 aaPredicted RBP6.23□□□□□ -1.41
USP48-209ENST00000487880 SKAP2O75563 359 aaPredicted RBP6.23□□□□□ -1.41
USP48-209ENST00000487880 ITGA5P08648 1049 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 TMEM225BP0DP42 221 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 GRM1Q13255 1194 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 PFKFB4Q16877 469 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 TRIM71Q2Q1W2 868 aaKnown RBP6.23□□□□□ -1.41
USP48-209ENST00000487880 L1TD1Q5T7N2 865 aaKnown RBP6.23□□□□□ -1.41
USP48-209ENST00000487880 ERAP2Q6P179 960 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 SLC29A4Q7RTT9 530 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 LINC01465Q8N7H1 131 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 GRAMD1AQ96CP6 724 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 MACROD1Q9BQ69 325 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 CPNE5Q9HCH3 593 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 FSCN3Q9NQT6 498 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 SNX15Q9NRS6 342 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 RXFP3Q9NSD7 469 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 LPAR3Q9UBY5 353 aa6.23□□□□□ -1.41
USP48-209ENST00000487880 IFRD1O00458 451 aaPredicted RBP6.22□□□□□ -1.41
USP48-209ENST00000487880 CES2O00748 559 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 PDE8BO95263 885 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 HNRNPCP07910 306 aaKnown RBP eCLIP6.22□□□□□ -1.41
USP48-209ENST00000487880 GPD1P21695 349 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 ADRA1DP25100 572 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 PBX1P40424 430 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 TRAPPC10P48553 1259 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 PTH2RP49190 550 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 HMGA2P52926 109 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 DEUP1Q05D60 604 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 LMAN2Q12907 356 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 KCNJ12Q14500 433 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 FAM90A2PQ658T7 463 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 CEP85Q6P2H3 762 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 KIRREL2Q6UWL6 708 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 RASGRP3Q8IV61 690 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms