RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 SYPP08247 313 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 FAM163BP0C2L3 166 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 MAOBP27338 520 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 BNC1Q01954 994 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 ANO4Q32M45 955 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 PLEKHG6Q3KR16 790 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 LARP1BQ659C4 914 aaKnown RBP16.28■□□□□ 0.2
MCF2L-228ENST00000487354 GRAMD4Q6IC98 578 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 GLRX5Q86SX6 157 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 FAM35AQ86V20 835 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 ZMIZ2Q8NF64 920 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 BAHD1Q8TBE0 780 aaPredicted RBP16.28■□□□□ 0.2
MCF2L-228ENST00000487354 CGRRF1Q99675 332 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 DNAJC17Q9NVM6 304 aaKnown RBP16.28■□□□□ 0.2
MCF2L-228ENST00000487354 TOR4AQ9NXH8 423 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 MARK1Q9P0L2 795 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 SH3BP1Q9Y3L3 701 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 NUMA1Q14980 2115 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 TGFB1I1O43294 461 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 DKK1O94907 266 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 STAU1O95793 577 aaKnown RBP16.27■□□□□ 0.2
MCF2L-228ENST00000487354 CISD3P0C7P0 127 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 IRF1P10914 325 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 SURF1Q15526 300 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 WDR72Q3MJ13 1102 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 BTBD8Q5XKL5 378 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 HTR3DQ70Z44 454 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 EPM2AIP1Q7L775 607 aaPredicted RBP16.27■□□□□ 0.2
MCF2L-228ENST00000487354 SMYD3Q9H7B4 428 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 IL21RQ9HBE5 538 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 CACNA2D2Q9NY47 1150 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 PCOLCE2Q9UKZ9 415 aa16.27■□□□□ 0.2
MCF2L-228ENST00000487354 KNL1Q8NG31 2342 aa16.27■□□□□ 0.19
MCF2L-228ENST00000487354 CABIN1Q9Y6J0 2220 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 A8MXQ7 604 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 WASH3PC4AMC7 463 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 NEDD8-MDP1E9PL57 170 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 BEST1O76090 585 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 DLATP10515 647 aaKnown RBP16.26■□□□□ 0.19
MCF2L-228ENST00000487354 TYRP14679 529 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 RDXP35241 583 aaKnown RBP16.26■□□□□ 0.19
MCF2L-228ENST00000487354 MYL6P60660 151 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 CYP24A1Q07973 514 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 PSMD6Q15008 389 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 SNRNP35Q16560 246 aaKnown RBP16.26■□□□□ 0.19
MCF2L-228ENST00000487354 FAM173BQ6P4H8 233 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 CHPFQ8IZ52 775 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 FUKQ8N0W3 1084 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 PLEKHO2Q8TD55 490 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 DNASE2BQ8WZ79 361 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 ELMO3Q96BJ8 720 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 SMOQ99835 787 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 KLF16Q9BXK1 252 aaPredicted RBP16.26■□□□□ 0.19
MCF2L-228ENST00000487354 SDCBP2Q9H190 292 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 CCDC86Q9H6F5 360 aaKnown RBP16.26■□□□□ 0.19
MCF2L-228ENST00000487354 OSER1Q9NX31 292 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 USP36Q9P275 1121 aaKnown RBP16.26■□□□□ 0.19
MCF2L-228ENST00000487354 SMC3Q9UQE7 1217 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 RAXQ9Y2V3 346 aa16.26■□□□□ 0.19
MCF2L-228ENST00000487354 URB1O60287 2271 aaKnown RBP16.26■□□□□ 0.19
MCF2L-228ENST00000487354 GOLGA4Q13439 2230 aaKnown RBP16.25■□□□□ 0.19
MCF2L-228ENST00000487354 KCNJ18B7U540 433 aa16.25■□□□□ 0.19
MCF2L-228ENST00000487354 TBX18O95935 607 aa16.25■□□□□ 0.19
MCF2L-228ENST00000487354 CDH8P55286 799 aa16.25■□□□□ 0.19
MCF2L-228ENST00000487354 TNNC1P63316 161 aa16.25■□□□□ 0.19
MCF2L-228ENST00000487354 PREPLQ4J6C6 727 aaPredicted RBP16.25■□□□□ 0.19
MCF2L-228ENST00000487354 MARCH9Q86YJ5 346 aa16.25■□□□□ 0.19
MCF2L-228ENST00000487354 PANK2Q9BZ23 570 aa16.25■□□□□ 0.19
MCF2L-228ENST00000487354 FAM124BQ9H5Z6 455 aaPredicted RBP16.25■□□□□ 0.19
MCF2L-228ENST00000487354 DMAP1Q9NPF5 467 aaPredicted RBP16.25■□□□□ 0.19
MCF2L-228ENST00000487354 AGPAT3Q9NRZ7 376 aa16.25■□□□□ 0.19
MCF2L-228ENST00000487354 KRT82Q9NSB4 513 aa16.25■□□□□ 0.19
MCF2L-228ENST00000487354 SUSD2Q9UGT4 822 aa16.25■□□□□ 0.19
MCF2L-228ENST00000487354 R3HCC1Q9Y3T6 440 aaKnown RBP16.25■□□□□ 0.19
MCF2L-228ENST00000487354 ASH1LQ9NR48 2969 aaKnown RBP16.24■□□□□ 0.19
MCF2L-228ENST00000487354 TLR5O60602 858 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 STAT6P42226 847 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 FUT11Q495W5 492 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 Q6ZNB5 142 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 CCDC73Q6ZRK6 1079 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 TPGS1Q6ZTW0 290 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 GPRIN1Q7Z2K8 1008 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 RGL4Q8IZJ4 473 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 ZCCHC9Q8N567 271 aaKnown RBP16.24■□□□□ 0.19
MCF2L-228ENST00000487354 RDH13Q8NBN7 331 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 C1orf216Q8TAB5 229 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 CCDC127Q96BQ5 260 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 SMARCD1Q96GM5 515 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 BBS2Q9BXC9 721 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 MKRN2Q9H000 416 aaKnown RBP16.24■□□□□ 0.19
MCF2L-228ENST00000487354 VRTNQ9H8Y1 702 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 KIAA1586Q9HCI6 787 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 WSB2Q9NYS7 404 aaPredicted RBP16.24■□□□□ 0.19
MCF2L-228ENST00000487354 NXF1Q9UBU9 619 aaKnown RBP16.24■□□□□ 0.19
MCF2L-228ENST00000487354 HMGXB4Q9UGU5 601 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 FBXO10Q9UK96 956 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 FNDC3AQ9Y2H6 1198 aaKnown RBP16.24■□□□□ 0.19
MCF2L-228ENST00000487354 NFE2L3Q9Y4A8 694 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 SLCO1B1Q9Y6L6 691 aa16.24■□□□□ 0.19
MCF2L-228ENST00000487354 MORC2Q9Y6X9 1032 aaPredicted RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms