RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TOPORSQ9NS56 1045 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 PARVAQ9NVD7 372 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 DDX56Q9NY93 547 aaKnown RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 UBAP1Q9NZ09 502 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 ZC3H7BQ9UGR2 993 aaKnown RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 DRG1Q9Y295 367 aaKnown RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 PCDHB2Q9Y5E7 798 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 HEY1Q9Y5J3 304 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 SNED1Q8TER0 1413 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 SLC16A4O15374 487 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 AP1G1O43747 822 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 KLHL41O60662 606 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 CST8O60676 142 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 STAM2O75886 525 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 DGKIO75912 1065 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 FAM155BO75949 473 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 ZBTB11O95625 1053 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 TNNI1P19237 187 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 TCN1P20061 433 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 MX2P20592 715 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 GNA15P30679 374 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 EMP3P54852 163 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 MYBPC1Q00872 1141 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 SPIDRQ14159 915 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 BTG3Q14201 252 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 MYBPC2Q14324 1141 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 HADHQ16836 314 aaKnown RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 CASC4Q6P4E1 433 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 TRIM72Q6ZMU5 477 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 Q6ZNX1 250 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 ENOSF1Q7L5Y1 443 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 ZBTB46Q86UZ6 589 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 SLC9A9Q8IVB4 645 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 RNF148Q8N7C7 305 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 SCAIQ8N9R8 606 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 FAM71DQ8N9W8 422 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 AGR3Q8TD06 166 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 MCEEQ96PE7 176 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 LXNQ9BS40 222 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 TMEM8AQ9HCN3 771 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 ATF5Q9Y2D1 282 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 PLLPQ9Y342 182 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 HEMK1Q9Y5R4 338 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 FAM86B1E9PN63 330 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 GOLGA8TH3BQL2 631 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 SIN3BO75182 1162 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 SEC24DO94855 1032 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 P4HBP07237 508 aaKnown RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 FAM86B2P0C5J1 330 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 DHRS4L1P0CG22 281 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 RBP3P10745 1247 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 COX4I1P13073 169 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 RAB15P59190 212 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 EIF3EP60228 445 aaKnown RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 PPP4CP60510 307 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 PSMC5P62195 406 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 MRPS9P82933 396 aaKnown RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 SLC15A2Q16348 729 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 FAM98CQ17RN3 349 aaKnown RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 MSS51Q4VC12 460 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 TMEM270Q6UE05 265 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 C3orf67Q6ZVT6 689 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 TXNRD3Q86VQ6 643 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 ZNF786Q8N393 782 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 BHLHE22Q8NFJ8 381 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 TRPC4APQ8TEL6 797 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 CPT1BQ92523 772 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 USP13Q92995 863 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 ERLEC1Q96DZ1 483 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 WRNIP1Q96S55 665 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 TEKT3Q9BXF9 490 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 CALN1Q9BXU9 219 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 SENP6Q9GZR1 1112 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 NYXQ9GZU5 481 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 ARMC7Q9H6L4 198 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 INIPQ9NRY2 104 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 UTP6Q9NYH9 597 aaKnown RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 GPC6Q9Y625 555 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 IVNS1ABPQ9Y6Y0 642 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 CYP3A7-CYP3A51PA0A087WV96 503 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 H3BNX3 289 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 WDR46O15213 610 aaKnown RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 CNOT3O75175 753 aaKnown RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 ITGAVP06756 1048 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 GSTT2P0CG29 244 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 GSTT2BP0CG30 244 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 ZNF12P17014 697 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 EIF2AK2P19525 551 aaKnown RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 ITGAXP20702 1163 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 CYP3A7P24462 503 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 ADSSP30520 456 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 RPL22P35268 128 aaKnown RBP6.45□□□□□ -1.38
VPS13D-209ENST00000487188 SERPINB5P36952 375 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 ETV4P43268 484 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 SLC1A6P48664 564 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 BCAP31P51572 246 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 PKNOX1P55347 436 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 PEX3P56589 373 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 SLC18A2Q05940 514 aa6.45□□□□□ -1.38
VPS13D-209ENST00000487188 RGS21Q2M5E4 152 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms