RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 DGKEP52429 567 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 PRKAA2P54646 552 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 BCAT1P54687 386 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 EPHB4P54760 987 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 MC2RQ01718 297 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 MYO1EQ12965 1108 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 GPS1Q13098 491 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 CUL4BQ13620 913 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 FAM110CQ1W6H9 321 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 TBC1D10BQ4KMP7 808 aaPredicted RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 METTL24Q5JXM2 366 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 FAM102AQ5T9C2 384 aaPredicted RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 MANEALQ5VSG8 457 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 METRNLQ641Q3 311 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 RSRC2Q7L4I2 434 aaKnown RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 RRAGAQ7L523 313 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 PCGF5Q86SE9 256 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 LRRTM4Q86VH4 590 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 TICAM2Q86XR7 235 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 RHOT2Q8IXI1 618 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 GSPT2Q8IYD1 628 aaKnown RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 SPARTQ8N0X7 666 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 ESX1Q8N693 406 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 SCAMP5Q8TAC9 235 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 DNAJB14Q8TBM8 379 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 SPPL3Q8TCT6 385 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 ZNF483Q8TF39 744 aaPredicted RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 ZSWIM1Q9BR11 485 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 RTKNQ9BST9 563 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 SLC26A6Q9BXS9 759 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 PABPC3Q9H361 631 aaKnown RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 SEPSECSQ9HD40 501 aaKnown RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 STK26Q9P289 416 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 CTTNBP2NLQ9P2B4 639 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 FEM1BQ9UK73 627 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 ZNF536O15090 1300 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 METP08581 1390 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 LRPPRCP42704 1394 aaKnown RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 ASXL1Q8IXJ9 1541 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 NRXN3Q9Y4C0 1643 aa4.6□□□□□ -1.67
PTCD3-216ENST00000487043 SETD1AO15047 1707 aaKnown RBP4.6□□□□□ -1.67
PTCD3-216ENST00000487043 TISP43B9A030 160 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 LAMTOR5O43504 91 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 FAM155BO75949 473 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 NTSR2O95665 410 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 VIPP01282 170 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 LMNAP02545 664 aaKnown RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 ANXA6P08133 673 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 JUPP14923 745 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 RXRAP19793 462 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 ITGALP20701 1170 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 CST5P28325 142 aaPredicted RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 APOBEC3AP31941 199 aaPredicted RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 PAPOLAP51003 745 aaKnown RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 RNASE9P60153 205 aaKnown RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 HSD11B2P80365 405 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 SCAPQ12770 1279 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 SURF1Q15526 300 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 TRIM71Q2Q1W2 868 aaKnown RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 DCAF17Q5H9S7 520 aaPredicted RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 ATPAF1Q5TC12 328 aaPredicted RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 ARHGAP40Q5TG30 622 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 AGAP9Q5VTM2 703 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 SLFN13Q68D06 897 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 RETSATQ6NUM9 610 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 FOXR2Q6PJQ5 311 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 SGMS1Q86VZ5 419 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 HEATR4Q86WZ0 1026 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 TMTC1Q8IUR5 882 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 SLC44A2Q8IWA5 706 aaPredicted RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 FUKQ8N0W3 1084 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 TTC9BQ8N6N2 239 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 SIMC1Q8NDZ2 872 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 OR56A1Q8NGH5 318 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 SLC30A5Q8TAD4 765 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 CSGALNACT1Q8TDX6 532 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 TMEM171Q8WVE6 324 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 MIEF2Q96C03 454 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 MAELQ96JY0 434 aaKnown RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 FAM227BQ96M60 508 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 COG8Q96MW5 612 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 TRAPPC9Q96Q05 1148 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 DLC1Q96QB1 1528 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 PRAM1Q96QH2 718 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 PIK3R4Q99570 1358 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 PTDSS2Q9BVG9 487 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 BRD8Q9H0E9 1235 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 TP63Q9H3D4 680 aaPredicted RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 RNPEPQ9H4A4 650 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 CXorf36Q9H7Y0 433 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 GBA2Q9HCG7 927 aaPredicted RBP4.59□□□□□ -1.67
PTCD3-216ENST00000487043 PRDM8Q9NQV8 689 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 HELLSQ9NRZ9 838 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 SMC4Q9NTJ3 1288 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 DISP3Q9P2K9 1392 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 SWAP70Q9UH65 585 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 CA14Q9ULX7 337 aa4.59□□□□□ -1.67
PTCD3-216ENST00000487043 TECPR2O15040 1411 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms