RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 CCDC66A2RUB6 948 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 LRCH4O75427 683 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 TCF4P15884 667 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 PRLRP16471 622 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 HMGA1P17096 107 aaKnown RBP18.37■□□□□ 0.53
UPF3A-206ENST00000480362 CTNNA1P35221 906 aaKnown RBP18.37■□□□□ 0.53
UPF3A-206ENST00000480362 SULT1E1P49888 294 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 AMPD2Q01433 879 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 PLD1Q13393 1074 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 TAF12Q16514 161 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 SLC25A52Q3SY17 297 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 RAB6CQ53S08 254 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 BEND5Q7L4P6 421 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 RHOT1Q8IXI2 618 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 ARHGAP18Q8N392 663 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 UBL4BQ8N7F7 174 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 FAM172AQ8WUF8 416 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 CENPIQ92674 756 aaPredicted RBP18.37■□□□□ 0.53
UPF3A-206ENST00000480362 NT5C3BQ969T7 300 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 OSBPL9Q96SU4 736 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 TBCBQ99426 244 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 NPY6RQ99463 290 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 TRIM62Q9BVG3 475 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 RAB6CQ9H0N0 254 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 PCDHA3Q9Y5H8 950 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 GREB1Q4ZG55 1949 aa18.37■□□□□ 0.53
UPF3A-206ENST00000480362 RFXAPO00287 272 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 KCNK3O14649 394 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 PER2O15055 1255 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 SRGAP2O75044 1071 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 C1RP00736 705 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 C8AP07357 584 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 MIPP30301 263 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 CXCR5P32302 372 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 MARCKSL1P49006 195 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 PEX5P50542 639 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 PITX1P78337 314 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-206ENST00000480362 MLLT1Q03111 559 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-206ENST00000480362 HADHQ16836 314 aaKnown RBP18.36■□□□□ 0.53
UPF3A-206ENST00000480362 DNAJB7Q7Z6W7 309 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-206ENST00000480362 ADGRD2Q7Z7M1 963 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 SLC22A17Q8WUG5 538 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 ALG3Q92685 438 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 SLITRK1Q96PX8 696 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 ADAM33Q9BZ11 813 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 TLR8Q9NR97 1041 aaKnown RBP18.36■□□□□ 0.53
UPF3A-206ENST00000480362 OSER1Q9NX31 292 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 RRN3Q9NYV6 651 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 PCSK1NQ9UHG2 260 aa18.36■□□□□ 0.53
UPF3A-206ENST00000480362 MYO16Q9Y6X6 1858 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 M0QYT0 321 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 PSTPIP1O43586 416 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 LRG1P02750 347 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 EPCAMP16422 314 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 TCP1P17987 556 aaKnown RBP18.35■□□□□ 0.53
UPF3A-206ENST00000480362 PCK1P35558 622 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 GJC1P36383 396 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 PSEN1P49768 467 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 STRADAQ7RTN6 431 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 RBM23Q86U06 439 aaKnown RBP18.35■□□□□ 0.53
UPF3A-206ENST00000480362 ITIH5Q86UX2 942 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 RNF139Q8WU17 664 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 PSMG2Q969U7 264 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 PBKQ96KB5 322 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 MYRFLQ96LU7 910 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 NCAPGQ9BPX3 1015 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 CALCOCO1Q9P1Z2 691 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 USP18Q9UMW8 372 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.35■□□□□ 0.53
UPF3A-206ENST00000480362 ASB3Q9Y575 518 aa18.35■□□□□ 0.53
UPF3A-206ENST00000480362 ZNF638Q14966 1978 aaKnown RBP18.34■□□□□ 0.53
UPF3A-206ENST00000480362 ENDOD1O94919 500 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 TRUB2O95900 331 aaKnown RBP18.34■□□□□ 0.53
UPF3A-206ENST00000480362 ZDHHC11BP0C7U3 371 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 RALAP11233 206 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 HDAC4P56524 1084 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 RWDD2BP57060 319 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 SLC25A11Q02978 314 aaKnown RBP18.34■□□□□ 0.53
UPF3A-206ENST00000480362 DEUP1Q05D60 604 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 ATP13A4Q4VNC1 1196 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 PPM1LQ5SGD2 360 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 LRRC38Q5VT99 294 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 OTUD1Q5VV17 481 aaPredicted RBP18.34■□□□□ 0.53
UPF3A-206ENST00000480362 SCYL2Q6P3W7 929 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 BNIPLQ7Z465 357 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 PDZD8Q8NEN9 1154 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 COG1Q8WTW3 980 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 OVCA2Q8WZ82 227 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 TRMT2BQ96GJ1 504 aaKnown RBP18.34■□□□□ 0.53
UPF3A-206ENST00000480362 ZNF512Q96ME7 567 aaPredicted RBP18.34■□□□□ 0.53
UPF3A-206ENST00000480362 PLEKHA4Q9H4M7 779 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 TLE6Q9H808 572 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 ZWILCHQ9H900 591 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 MAN1C1Q9NR34 630 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 CLIC5Q9NZA1 410 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 CDC23Q9UJX2 597 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 NUDT5Q9UKK9 219 aa18.34■□□□□ 0.53
UPF3A-206ENST00000480362 CEP290O15078 2479 aa18.33■□□□□ 0.53
UPF3A-206ENST00000480362 SYNJ2BP-COX16A0A087WUM0 186 aa18.33■□□□□ 0.52
UPF3A-206ENST00000480362 ZNF185O15231 689 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms