RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 PGK1P00558 417 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 WARSP23381 471 aaKnown RBP13.54□□□□□ -0.24
SEC13-216ENST00000479868 CYP2F1P24903 491 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 RBL1P28749 1068 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 RDXP35241 583 aaKnown RBP13.54□□□□□ -0.24
SEC13-216ENST00000479868 DPYSL2Q16555 572 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 NBPF20Q3BBV1 942 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 WSCD1Q658N2 575 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 PIGZQ86VD9 579 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 VSIG1Q86XK7 387 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 TOP6BLQ8N6T0 577 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 CCDC185Q8N715 623 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 GSTCDQ8NEC7 633 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 HSFY1Q96LI6 401 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 DHX35Q9H5Z1 703 aaKnown RBP13.54□□□□□ -0.24
SEC13-216ENST00000479868 NRDE2Q9H7Z3 1164 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 ZFYVE28Q9HCC9 887 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 CYLDQ9NQC7 956 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 MTMR10Q9NXD2 777 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.53□□□□□ -0.24
SEC13-216ENST00000479868 TCP11X1B4DZS4 312 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 XPO1O14980 1071 aaKnown RBP13.53□□□□□ -0.24
SEC13-216ENST00000479868 CTSHP09668 335 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 RARBP10826 455 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 SCNN1AP37088 669 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 MLH1P40692 756 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 ACADSBP45954 432 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 RNASELQ05823 741 aaKnown RBP13.53□□□□□ -0.24
SEC13-216ENST00000479868 ADIGQ0VDE8 80 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 KCNJ11Q14654 390 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 SPRED3Q2MJR0 410 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 EFHC2Q5JST6 749 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 KIAA0319Q5VV43 1072 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 GDF6Q6KF10 455 aaPredicted RBP13.53□□□□□ -0.24
SEC13-216ENST00000479868 C3orf62Q6ZUJ4 267 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 PAQR9Q6ZVX9 377 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 ARCQ7LC44 396 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 IGDCC3Q8IVU1 814 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 PDIK1LQ8N165 341 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 ATP11CQ8NB49 1132 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 CKAP2Q8WWK9 683 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 HNRNPABQ99729 332 aaKnown RBP13.53□□□□□ -0.24
SEC13-216ENST00000479868 ELAC2Q9BQ52 826 aaKnown RBP13.53□□□□□ -0.24
SEC13-216ENST00000479868 OSBPL7Q9BZF2 842 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 GTF2IRD1Q9UHL9 959 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 ST3GAL5Q9UNP4 418 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 AP4E1Q9UPM8 1137 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 SMAPO00193 183 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 SPAG7O75391 227 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 FBF1Q8TES7 1133 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 LPPQ93052 612 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 RTP4Q96DX8 246 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 KCTD15Q96SI1 283 aaPredicted RBP13.53□□□□□ -0.24
SEC13-216ENST00000479868 NCAPGQ9BPX3 1015 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 DUSP16Q9BY84 665 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 ARHGAP39Q9C0H5 1083 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.53□□□□□ -0.24
SEC13-216ENST00000479868 CHMP2BQ9UQN3 213 aa13.53□□□□□ -0.24
SEC13-216ENST00000479868 ZNF638Q14966 1978 aaKnown RBP13.53□□□□□ -0.24
SEC13-216ENST00000479868 M0QZ92 97 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 AVILO75366 819 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 ZBED1O96006 694 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 SLC10A3P09131 477 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 CHRM1P11229 460 aaPredicted RBP13.52□□□□□ -0.24
SEC13-216ENST00000479868 CYBAP13498 195 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 PTPN1P18031 435 aaKnown RBP13.52□□□□□ -0.24
SEC13-216ENST00000479868 KRT15P19012 456 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 GEMIN4P57678 1058 aaKnown RBP13.52□□□□□ -0.24
SEC13-216ENST00000479868 GJA9P57773 515 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 PITX1P78337 314 aaPredicted RBP13.52□□□□□ -0.24
SEC13-216ENST00000479868 GBE1Q04446 702 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 SLC10A2Q12908 348 aaPredicted RBP13.52□□□□□ -0.24
SEC13-216ENST00000479868 DEFB106AQ8N104 65 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 PYROXD2Q8N2H3 581 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 MICALL1Q8N3F8 863 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 CCDC33Q8N5R6 958 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 CCDC197Q8NCU1 140 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 PPM1EQ8WY54 764 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 TRIB2Q92519 343 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 GAD1Q99259 594 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 MTG1Q9BT17 334 aaPredicted RBP13.52□□□□□ -0.24
SEC13-216ENST00000479868 TSPYL2Q9H2G4 693 aaPredicted RBP13.52□□□□□ -0.24
SEC13-216ENST00000479868 RAB6BQ9NRW1 208 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 FAM105AQ9NUU6 356 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 FGFR1OP2Q9NVK5 253 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 NKIRAS1Q9NYS0 192 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 PSMC3IPQ9P2W1 217 aaPredicted RBP13.52□□□□□ -0.24
SEC13-216ENST00000479868 SLC24A2Q9UI40 661 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 TRPV2Q9Y5S1 764 aa13.52□□□□□ -0.24
SEC13-216ENST00000479868 A0A1W2PPM1 405 aa13.52□□□□□ -0.25
SEC13-216ENST00000479868 BCLAF3A2AJT9 711 aaKnown RBP13.52□□□□□ -0.25
SEC13-216ENST00000479868 FAM47DPA6NHR8 397 aa13.52□□□□□ -0.25
SEC13-216ENST00000479868 ZNF487B1APH4 448 aa13.52□□□□□ -0.25
SEC13-216ENST00000479868 GABRDO14764 452 aa13.52□□□□□ -0.25
SEC13-216ENST00000479868 CHRNA1P02708 482 aa13.52□□□□□ -0.25
SEC13-216ENST00000479868 NPR3P17342 541 aa13.52□□□□□ -0.25
SEC13-216ENST00000479868 STX2P32856 288 aa13.52□□□□□ -0.25
SEC13-216ENST00000479868 PHBP35232 272 aa13.52□□□□□ -0.25
SEC13-216ENST00000479868 ELK3P41970 407 aa13.52□□□□□ -0.25
SEC13-216ENST00000479868 MATKP42679 507 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms