RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 EPHA5P54756 1037 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 RNASE9P60153 205 aaKnown RBP13.72□□□□□ -0.21
CHD3-210ENST00000479080 DLX2Q07687 328 aaPredicted RBP13.72□□□□□ -0.21
CHD3-210ENST00000479080 EIF4EBP2Q13542 120 aaPredicted RBP13.72□□□□□ -0.21
CHD3-210ENST00000479080 SLC5A9Q2M3M2 681 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 ARHGAP29Q52LW3 1261 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 EFHC1Q5JVL4 640 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 SNX30Q5VWJ9 437 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 TMEM184AQ6ZMB5 413 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 CYP4V2Q6ZWL3 525 aaPredicted RBP13.72□□□□□ -0.21
CHD3-210ENST00000479080 SLC35F6Q8N357 371 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 EFHBQ8N7U6 833 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 DQX1Q8TE96 717 aaKnown RBP13.72□□□□□ -0.21
CHD3-210ENST00000479080 FNIP1Q8TF40 1166 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 NT5C3BQ969T7 300 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 FAM149B1Q96BN6 582 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 TCEAL4Q96EI5 215 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 TBCBQ99426 244 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 NPY6RQ99463 290 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 CDCA3Q99618 268 aaPredicted RBP13.72□□□□□ -0.21
CHD3-210ENST00000479080 FBXO44Q9H4M3 255 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 MRPL47Q9HD33 250 aaKnown RBP13.72□□□□□ -0.21
CHD3-210ENST00000479080 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.72□□□□□ -0.212e-8■□□□□ 10.2
CHD3-210ENST00000479080 ZDHHC7Q9NXF8 308 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 CLEC1BQ9P126 229 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 NUDT5Q9UKK9 219 aa13.72□□□□□ -0.21
CHD3-210ENST00000479080 MTCL1Q9Y4B5 1905 aaKnown RBP13.72□□□□□ -0.21
CHD3-210ENST00000479080 NOTCH4Q99466 2003 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 ZNF840PA6NDX5 716 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 I6L893 689 aaPredicted RBP13.71□□□□□ -0.21
CHD3-210ENST00000479080 HNRNPA1P09651 372 aaKnown RBP eCLIP13.71□□□□□ -0.21
CHD3-210ENST00000479080 GJA1P17302 382 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 GPD1P21695 349 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 LTBRP36941 435 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 MATKP42679 507 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 PTPN9P43378 593 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 NOP2P46087 812 aaKnown RBP13.71□□□□□ -0.21
CHD3-210ENST00000479080 ZNF143P52747 638 aaPredicted RBP13.71□□□□□ -0.21
CHD3-210ENST00000479080 TAS2R40P59535 323 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 YWHAZP63104 245 aaKnown RBP13.71□□□□□ -0.21
CHD3-210ENST00000479080 CYP4F8P98187 520 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 ADAM15Q13444 863 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 MESDQ14696 234 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 CTC1Q2NKJ3 1217 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 HABP4Q5JVS0 413 aaKnown RBP13.71□□□□□ -0.21
CHD3-210ENST00000479080 PRSS36Q5K4E3 855 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 C11orf63Q6NUN7 778 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 MSANTD2Q6P1R3 559 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 RTL10Q7L3V2 364 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 BEND5Q7L4P6 421 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 TAC4Q86UU9 113 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 MON1AQ86VX9 555 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 RNF10Q8N5U6 811 aaKnown RBP13.71□□□□□ -0.21
CHD3-210ENST00000479080 NIPA2Q8N8Q9 360 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 CMASQ8NFW8 434 aaPredicted RBP13.71□□□□□ -0.21
CHD3-210ENST00000479080 CENPIQ92674 756 aaPredicted RBP13.71□□□□□ -0.21
CHD3-210ENST00000479080 CASP10Q92851 521 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 CD101Q93033 1021 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 GUCD1Q96NT3 240 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 WDR24Q96S15 920 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 PEBP4Q96S96 227 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 PRKD2Q9BZL6 878 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 CCSER2Q9H7U1 834 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 POPDC2Q9HBU9 364 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 ANLNQ9NQW6 1124 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.71□□□□□ -0.21
CHD3-210ENST00000479080 ASB3Q9Y575 518 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 OBSL1O75147 1896 aa13.71□□□□□ -0.21
CHD3-210ENST00000479080 ZNF638Q14966 1978 aaKnown RBP13.71□□□□□ -0.22
CHD3-210ENST00000479080 C2orf78A6NCI8 922 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 TMEM110-MUSTN1A8MSY1 372 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 ESPNB1AK53 854 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 SART1O43290 800 aaKnown RBP13.7□□□□□ -0.22
CHD3-210ENST00000479080 NCK2O43639 380 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 LRCH4O75427 683 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 TBX18O95935 607 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 FTCDO95954 541 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 PDGFRAP16234 1089 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 NOS2P35228 1153 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 MARCKSL1P49006 195 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 HDAC4P56524 1084 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 SNX16P57768 344 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 VEPH1Q14D04 833 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 STXBP5Q5T5C0 1151 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 TXNRD3NBQ6F5E7 133 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 ANKRD54Q6NXT1 300 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 DCUN1D2Q6PH85 259 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 TMC5Q6UXY8 1006 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 NT5DC3Q86UY8 548 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 SHKBP1Q8TBC3 707 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 ADAM32Q8TC27 787 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 MYLIPQ8WY64 445 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 OVCA2Q8WZ82 227 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 SLC22A12Q96S37 553 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 CORO1BQ9BR76 489 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 APOL5Q9BWW9 433 aa13.7□□□□□ -0.22
CHD3-210ENST00000479080 CCDC195A0A1B0GUA6 201 aa13.69□□□□□ -0.22
CHD3-210ENST00000479080 GOLGA6L9A6NEM1 432 aa13.69□□□□□ -0.22
CHD3-210ENST00000479080 ENDOD1O94919 500 aa13.69□□□□□ -0.22
CHD3-210ENST00000479080 OLFM2O95897 454 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms