RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	DOCK8	Q8NF50	2099 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	CUL9	Q8IWT3	2517 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	YJEFN3	A6XGL0	299 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095		E5RJQ4	531 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095		E7ENQ6	273 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	ARHGAP33	O14559	1287 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	CHAD	O15335	359 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	RALA	P11233	206 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	PFKL	P17858	780 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	TUB	P50607	506 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	DAOA	P59103	153 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	PFKP	Q01813	784 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	PDCL	Q13371	301 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	NR1I3	Q14994	352 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	TMEM31	Q5JXX7	168 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	C10orf120	Q5SQS8	335 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	PM20D1	Q6GTS8	502 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	CC2D1A	Q6P1N0	951 aa	Predicted RBP	10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	HFE2	Q6ZVN8	426 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	RSRC2	Q7L4I2	434 aa	Known RBP	10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	MIB1	Q86YT6	1006 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	SPNS2	Q8IVW8	549 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	WDTC1	Q8N5D0	677 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	EPS8L1	Q8TE68	723 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	DDX1	Q92499	740 aa	Known RBP	10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	EDEM1	Q92611	657 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	ZFR	Q96KR1	1074 aa	Known RBP	10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	HSFY1	Q96LI6	401 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	CPXM1	Q96SM3	734 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	MFSD1	Q9H3U5	465 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	CYLD	Q9NQC7	956 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	CNGB3	Q9NQW8	809 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	GKN1	Q9NS71	199 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	THG1L	Q9NWX6	298 aa	Known RBP	10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	GTSE1	Q9NYZ3	720 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	CFAP97	Q9P2B7	532 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	RASAL2	Q9UJF2	1139 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	PCDHGC3	Q9UN70	934 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	PTPRD	P23468	1912 aa		10.78	□□□□□ -0.68
HDAC6-222	ENST00000478095	BDP1	A6H8Y1	2624 aa		10.77	□□□□□ -0.68
HDAC6-222	ENST00000478095		A0A1W2PQC6	194 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	ARNTL	O00327	626 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	MME	P08473	750 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	ARSA	P15289	507 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	CD72	P21854	359 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	ATP5C1	P36542	298 aa	Known RBP	10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	SOX9	P48436	509 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	EFEMP1	Q12805	493 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	MLF2	Q15773	248 aa	Predicted RBP	10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	MEA1	Q16626	185 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	ARHGAP29	Q52LW3	1261 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	SLC44A4	Q53GD3	710 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	BSPRY	Q5W0U4	402 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	BTBD8	Q5XKL5	378 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	TPRG1	Q6ZUI0	275 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	SCUBE3	Q8IX30	993 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	ARHGAP18	Q8N392	663 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	FLCN	Q8NFG4	579 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	BAP1	Q92560	729 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	IRF7	Q92985	503 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	WBP2	Q969T9	261 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	PBXIP1	Q96AQ6	731 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	FAM149B1	Q96BN6	582 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	PIWIL1	Q96J94	861 aa	Known RBP	10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	C1QTNF1	Q9BXJ1	281 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	SLC4A5	Q9BY07	1137 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	XPO4	Q9C0E2	1151 aa	Known RBP	10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	EBF3	Q9H4W6	596 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	CLIC5	Q9NZA1	410 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	WNT16	Q9UBV4	365 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	NOCT	Q9UK39	431 aa	Known RBP	10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	DAAM1	Q9Y4D1	1078 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	CEP83	Q9Y592	693 aa		10.77	□□□□□ -0.69
HDAC6-222	ENST00000478095	LRRC53	A6NM62	1247 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	PAPSS1	O43252	624 aa	Predicted RBP	10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	ERBB2	P04626	1255 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	HMBS	P08397	361 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	ACADSB	P45954	432 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	IFNAR2	P48551	515 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	RPL34	P49207	117 aa	Known RBP	10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	KPNA1	P52294	538 aa	Predicted RBP	10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	LSM11	P83369	360 aa	Known RBP eCLIP	10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	PTPN20	Q4JDL3	420 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	C2CD6	Q53TS8	623 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	NAA35	Q5VZE5	725 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	TADA2B	Q86TJ2	420 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	TMEM110	Q86TL2	294 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	CSGALNACT1	Q8TDX6	532 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	STK32A	Q8WU08	396 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	RNF139	Q8WU17	664 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	DNASE1L2	Q92874	299 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	PPP1R13B	Q96KQ4	1090 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	FAM83C	Q9BQN1	747 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	KLF16	Q9BXK1	252 aa	Predicted RBP	10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	LHX5	Q9H2C1	402 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	LINC00597	Q9H2U6	94 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	SYNC	Q9H7C4	482 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	TBC1D17	Q9HA65	648 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	HPS4	Q9NQG7	708 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms