RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 RAD23BP54727 409 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 GAD2Q05329 585 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 LRRC63Q05C16 580 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 PLK5Q496M5 336 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 HSF5Q4G112 596 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-208ENST00000469802 ANKRD40Q6AI12 368 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 HTR3DQ70Z44 454 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 ELOA2Q8IYF1 753 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-208ENST00000469802 ZNF276Q8N554 614 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 IL17RCQ8NAC3 791 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 SLC4A11Q8NBS3 891 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 TSTD1Q8NFU3 115 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 NETO1Q8TDF5 533 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 SMARCE1Q969G3 411 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 SLC35C1Q96A29 364 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 TSG101Q99816 390 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 RTKNQ9BST9 563 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 GTPBP4Q9BZE4 634 aaKnown RBP17.19■□□□□ 0.34
COL9A3-208ENST00000469802 NACA2Q9H009 215 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 ARHGEF4Q9NR80 690 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 SPHK2Q9NRA0 654 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 SPTBN2O15020 2390 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 A0A1W2PQH9 124 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 APODP05090 189 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 IRF1P10914 325 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 HNRNPLP14866 589 aaKnown RBP eCLIP17.18■□□□□ 0.34
COL9A3-208ENST00000469802 ATP5C1P36542 298 aaKnown RBP17.18■□□□□ 0.34
COL9A3-208ENST00000469802 GRIA2P42262 883 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 PSEN1P49768 467 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 KDSRQ06136 332 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 CRY1Q16526 586 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 ZNF394Q53GI3 561 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 PLA2G2CQ5R387 149 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 ARHGAP17Q68EM7 881 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 SCD5Q86SK9 330 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 ALLCQ8N6M5 410 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 TATDN2Q93075 761 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 TMEM176AQ96HP8 235 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 CNOT6LQ96LI5 555 aaKnown RBP17.18■□□□□ 0.34
COL9A3-208ENST00000469802 DNAI2Q9GZS0 605 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 DUSP15Q9H1R2 295 aaPredicted RBP17.18■□□□□ 0.34
COL9A3-208ENST00000469802 PCDHGA5Q9Y5G8 931 aa17.18■□□□□ 0.34
COL9A3-208ENST00000469802 SLC30A4O14863 429 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 TULP3O75386 442 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 RARGP13631 454 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 TNFRSF4P43489 277 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 DGKEP52429 567 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 DCAF17Q5H9S7 520 aaPredicted RBP17.17■□□□□ 0.34
COL9A3-208ENST00000469802 TMEM92Q6UXU6 159 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 Q6ZNB5 142 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 TMEM25Q86YD3 366 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 CCDC33Q8N5R6 958 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 UBR7Q8N806 425 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 MDGA1Q8NFP4 955 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 ARRDC1-AS1Q9H2J1 176 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 CLIC5Q9NZA1 410 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 MARK1Q9P0L2 795 aa17.17■□□□□ 0.34
COL9A3-208ENST00000469802 LAMA1P25391 3075 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.16■□□□□ 0.34
COL9A3-208ENST00000469802 SGK1O00141 431 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 DCLK1O15075 740 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 CACNG3O60359 315 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 ADAM23O75077 832 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 ZNF806P0C7X5 589 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 CUL2Q13617 745 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 RAB41Q5JT25 222 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 TCERG1LQ5VWI1 586 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 ANO7Q6IWH7 933 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 TTC30AQ86WT1 665 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 TERB1Q8NA31 727 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 TXNDC5Q8NBS9 432 aaKnown RBP17.16■□□□□ 0.34
COL9A3-208ENST00000469802 OLIG1Q8TAK6 271 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 HEXIM2Q96MH2 286 aaKnown RBP17.16■□□□□ 0.34
COL9A3-208ENST00000469802 UBXN6Q9BZV1 441 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 ARMCX3Q9UH62 379 aaPredicted RBP17.16■□□□□ 0.34
COL9A3-208ENST00000469802 HOOK1Q9UJC3 728 aaKnown RBP17.16■□□□□ 0.34
COL9A3-208ENST00000469802 DNMT3LQ9UJW3 386 aa17.16■□□□□ 0.34
COL9A3-208ENST00000469802 PSMA7O14818 248 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 MDM4O15151 490 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 GDF9O60383 454 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 KLF8O95600 359 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-208ENST00000469802 CD44P16070 742 aaKnown RBP17.15■□□□□ 0.34
COL9A3-208ENST00000469802 TIE1P35590 1138 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 MPLP40238 635 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 GOLGA8FQ08AF8 430 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 GOLGA8DPQ0D2H9 430 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 ANO4Q32M45 955 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 C10orf120Q5SQS8 335 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 EMC10Q5UCC4 262 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 BTBD8Q5XKL5 378 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 PMS2CLQ68D20 193 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 FOXR2Q6PJQ5 311 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 PIGZQ86VD9 579 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 NAT16Q8N8M0 369 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 KCNV2Q8TDN2 545 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 DHTKD1Q96HY7 919 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-208ENST00000469802 TPSD1Q9BZJ3 242 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 DEC1Q9P2X7 70 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 NAGPAQ9UK23 515 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 LSM7Q9UK45 103 aaKnown RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms