RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 UBALD2Q8IYN6 164 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 CPA5Q8WXQ8 436 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 HAUS4Q9H6D7 363 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 SYNCQ9H7C4 482 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 ABCC13Q9NSE7 274 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 TJP2Q9UDY2 1190 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 DNMT3LQ9UJW3 386 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 NUDT5Q9UKK9 219 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 DUSP12Q9UNI6 340 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 CPQQ9Y646 472 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 DOCK8Q8NF50 2099 aa12.52□□□□□ -0.4
VPS13D-204ENST00000469054 C5orf42Q9H799 3197 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 LEFTY2O00292 366 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 NARSO43776 548 aaKnown RBP12.52□□□□□ -0.41
VPS13D-204ENST00000469054 LTFP02788 710 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 ERBB2P04626 1255 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 SRFP11831 508 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 SKILP12757 684 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 ALADP13716 330 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 TNFAIP3P21580 790 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 GDI1P31150 447 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 GABRB2P47870 512 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 ZNF75DP51815 510 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 KLHL30Q0D2K2 578 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 GRM2Q14416 872 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 ZNF77Q15935 545 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 OR6B2Q6IFH4 312 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 RSRC2Q7L4I2 434 aaKnown RBP12.52□□□□□ -0.41
VPS13D-204ENST00000469054 ZDHHC17Q8IUH5 632 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 YAF2Q8IY57 180 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 MSANTD4Q8NCY6 345 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 SH3RF2Q8TEC5 729 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 GOLGA1Q92805 767 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 KHSRPQ92945 711 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS13D-204ENST00000469054 FAM149B1Q96BN6 582 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 C18orf8Q96DM3 657 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 MRFAP1L1Q96HT8 127 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 ZFRQ96KR1 1074 aaKnown RBP12.52□□□□□ -0.41
VPS13D-204ENST00000469054 SYT11Q9BT88 431 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 SMOC2Q9H3U7 446 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 SLC2A4RGQ9NR83 387 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 SEPT11Q9NVA2 429 aaKnown RBP12.52□□□□□ -0.41
VPS13D-204ENST00000469054 SMPD4Q9NXE4 827 aa12.52□□□□□ -0.41
VPS13D-204ENST00000469054 PI4K2BG5E9Z4 385 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 ZNF263O14978 683 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 MDM4O15151 490 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 CHADO15335 359 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 GLI1P08151 1106 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 TPM1P09493 284 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 MMP8P22894 467 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 ZXDAP98168 799 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 SLC6A3Q01959 620 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 CENPCQ03188 943 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 EFEMP1Q12805 493 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 USP4Q13107 963 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 MTF1Q14872 753 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 CLEC16AQ2KHT3 1053 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 ARHGAP29Q52LW3 1261 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 EFHC1Q5JVL4 640 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 HGSNATQ68CP4 663 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 CC2D1AQ6P1N0 951 aaPredicted RBP12.51□□□□□ -0.41
VPS13D-204ENST00000469054 OLFML1Q6UWY5 402 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 FAM183BPQ6ZVS7 135 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 BEND5Q7L4P6 421 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 ZNF571Q7Z3V5 609 aaPredicted RBP12.51□□□□□ -0.41
VPS13D-204ENST00000469054 TMC6Q7Z403 805 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 DDX42Q86XP3 938 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS13D-204ENST00000469054 KIAA1958Q8N8K9 716 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 TTC16Q8NEE8 873 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 OR8K1Q8NGG5 319 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 RIN3Q8TB24 985 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 RNF139Q8WU17 664 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 EDEM1Q92611 657 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 KLF16Q9BXK1 252 aaPredicted RBP12.51□□□□□ -0.41
VPS13D-204ENST00000469054 BRD9Q9H8M2 597 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 GKN1Q9NS71 199 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 OLA1Q9NTK5 396 aaKnown RBP12.51□□□□□ -0.41
VPS13D-204ENST00000469054 ASNSD1Q9NWL6 643 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 THG1LQ9NWX6 298 aaKnown RBP12.51□□□□□ -0.41
VPS13D-204ENST00000469054 RASAL2Q9UJF2 1139 aa12.51□□□□□ -0.41
VPS13D-204ENST00000469054 BZW2Q9Y6E2 419 aaKnown RBP12.51□□□□□ -0.41
VPS13D-204ENST00000469054 GREB1Q4ZG55 1949 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 FAM170AA1A519 330 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 SERPING1P05155 500 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 FYNP06241 537 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 NCAM1P13591 858 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 HNRNPH3P31942 346 aaKnown RBP12.5□□□□□ -0.41
VPS13D-204ENST00000469054 NSFP46459 744 aaKnown RBP12.5□□□□□ -0.41
VPS13D-204ENST00000469054 YWHAZP63104 245 aaKnown RBP12.5□□□□□ -0.41
VPS13D-204ENST00000469054 COG7P83436 770 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 PFKPQ01813 784 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 GOLGA8FQ08AF8 430 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 GOLGA8DPQ0D2H9 430 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 TBX2Q13207 712 aaPredicted RBP12.5□□□□□ -0.41
VPS13D-204ENST00000469054 TAF5Q15542 800 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 C2CD6Q53TS8 623 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 TDRD12Q587J7 1177 aaKnown RBP12.5□□□□□ -0.41
VPS13D-204ENST00000469054 MMS22LQ6ZRQ5 1243 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 TOGARAM2Q6ZUX3 1019 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 SLC26A9Q7LBE3 791 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms