RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 SPHK2Q9NRA0 654 aa25.86■■□□□ 1.73
PTCH1-210ENST00000468211 VPS45Q9NRW7 570 aa25.86■■□□□ 1.73
PTCH1-210ENST00000468211 PLXND1Q9Y4D7 1925 aa25.86■■□□□ 1.73
PTCH1-210ENST00000468211 ACACBO00763 2458 aa25.85■■□□□ 1.73
PTCH1-210ENST00000468211 BCLAF3A2AJT9 711 aaKnown RBP25.85■■□□□ 1.73
PTCH1-210ENST00000468211 HOXC11O43248 304 aaPredicted RBP25.85■■□□□ 1.73
PTCH1-210ENST00000468211 TULP3O75386 442 aa25.85■■□□□ 1.73
PTCH1-210ENST00000468211 KRT13P13646 458 aa25.85■■□□□ 1.73
PTCH1-210ENST00000468211 PSMC2P35998 433 aaKnown RBP25.85■■□□□ 1.73
PTCH1-210ENST00000468211 USP39Q53GS9 565 aaKnown RBP25.85■■□□□ 1.73
PTCH1-210ENST00000468211 STPG1Q5TH74 334 aa25.85■■□□□ 1.73
PTCH1-210ENST00000468211 SEMA4DQ92854 862 aa25.85■■□□□ 1.73
PTCH1-210ENST00000468211 DUSP9Q99956 384 aaKnown RBP25.85■■□□□ 1.73
PTCH1-210ENST00000468211 NUDT5Q9UKK9 219 aa25.85■■□□□ 1.73
PTCH1-210ENST00000468211 HCN2Q9UL51 889 aa25.85■■□□□ 1.73
PTCH1-210ENST00000468211 SCML2Q9UQR0 700 aa25.85■■□□□ 1.73
PTCH1-210ENST00000468211 ACO1P21399 889 aaKnown RBP25.84■■□□□ 1.73
PTCH1-210ENST00000468211 TNFRSF4P43489 277 aa25.84■■□□□ 1.73
PTCH1-210ENST00000468211 MCCD1P59942 119 aaPredicted RBP25.84■■□□□ 1.73
PTCH1-210ENST00000468211 PMS2CLQ68D20 193 aa25.84■■□□□ 1.73
PTCH1-210ENST00000468211 HTR3DQ70Z44 454 aa25.84■■□□□ 1.73
PTCH1-210ENST00000468211 FRMD1Q8N878 549 aa25.84■■□□□ 1.73
PTCH1-210ENST00000468211 OLIG1Q8TAK6 271 aa25.84■■□□□ 1.73
PTCH1-210ENST00000468211 IMPG2Q9BZV3 1241 aa25.84■■□□□ 1.73
PTCH1-210ENST00000468211 CYLDQ9NQC7 956 aa25.84■■□□□ 1.73
PTCH1-210ENST00000468211 CEP192Q8TEP8 1941 aa25.84■■□□□ 1.73
PTCH1-210ENST00000468211 A0A1W2PQH9 124 aa25.83■■□□□ 1.73
PTCH1-210ENST00000468211 PALM2-AKAP2B1ALY0 433 aaPredicted RBP25.83■■□□□ 1.73
PTCH1-210ENST00000468211 MDM4O15151 490 aa25.83■■□□□ 1.73
PTCH1-210ENST00000468211 CAVIN2O95810 425 aa25.83■■□□□ 1.73
PTCH1-210ENST00000468211 KCNA4P22459 653 aa25.83■■□□□ 1.73
PTCH1-210ENST00000468211 RPL13P26373 211 aaKnown RBP25.83■■□□□ 1.73
PTCH1-210ENST00000468211 ENPEPQ07075 957 aa25.83■■□□□ 1.73
PTCH1-210ENST00000468211 ANO4Q32M45 955 aa25.83■■□□□ 1.73
PTCH1-210ENST00000468211 IL31Q6EBC2 164 aa25.83■■□□□ 1.73
PTCH1-210ENST00000468211 RLN3Q8WXF3 142 aa25.83■■□□□ 1.73
PTCH1-210ENST00000468211 TMEM8AQ9HCN3 771 aa25.83■■□□□ 1.73
PTCH1-210ENST00000468211 GON4LQ3T8J9 2241 aa25.82■■□□□ 1.72
PTCH1-210ENST00000468211 TBC1D3BA6NDS4 549 aa25.82■■□□□ 1.72
PTCH1-210ENST00000468211 ATP5C1P36542 298 aaKnown RBP25.82■■□□□ 1.72
PTCH1-210ENST00000468211 PNOCQ13519 176 aa25.82■■□□□ 1.72
PTCH1-210ENST00000468211 ZNF394Q53GI3 561 aa25.82■■□□□ 1.72
PTCH1-210ENST00000468211 PPP1R26Q5T8A7 1209 aaPredicted RBP25.82■■□□□ 1.72
PTCH1-210ENST00000468211 BTBD8Q5XKL5 378 aa25.82■■□□□ 1.72
PTCH1-210ENST00000468211 SCD5Q86SK9 330 aa25.82■■□□□ 1.72
PTCH1-210ENST00000468211 DEC1Q9P2X7 70 aa25.82■■□□□ 1.72
PTCH1-210ENST00000468211 EPG5Q9HCE0 2579 aa25.82■■□□□ 1.72
PTCH1-210ENST00000468211 CHD8Q9HCK8 2581 aa25.82■■□□□ 1.72
PTCH1-210ENST00000468211 RARGP13631 454 aa25.81■■□□□ 1.72
PTCH1-210ENST00000468211 KIF11P52732 1056 aa25.81■■□□□ 1.72
PTCH1-210ENST00000468211 HSF5Q4G112 596 aaPredicted RBP25.81■■□□□ 1.72
PTCH1-210ENST00000468211 EOGTQ5NDL2 527 aa25.81■■□□□ 1.72
PTCH1-210ENST00000468211 MIB1Q86YT6 1006 aa25.81■■□□□ 1.72
PTCH1-210ENST00000468211 ARID3AQ99856 593 aa25.81■■□□□ 1.72
PTCH1-210ENST00000468211 DUSP16Q9BY84 665 aa25.81■■□□□ 1.72
PTCH1-210ENST00000468211 PNPLA8Q9NP80 782 aa25.81■■□□□ 1.72
PTCH1-210ENST00000468211 MTPAPQ9NVV4 582 aaKnown RBP eCLIP25.81■■□□□ 1.72
PTCH1-210ENST00000468211 ATP6V1DQ9Y5K8 247 aa25.81■■□□□ 1.72
PTCH1-210ENST00000468211 ALDH1A2O94788 518 aa25.8■■□□□ 1.72
PTCH1-210ENST00000468211 P2RY2P41231 377 aa25.8■■□□□ 1.72
PTCH1-210ENST00000468211 EDRF1Q3B7T1 1238 aa25.8■■□□□ 1.72
PTCH1-210ENST00000468211 C10orf76Q5T2E6 689 aa25.8■■□□□ 1.72
PTCH1-210ENST00000468211 KRT39Q6A163 491 aa25.8■■□□□ 1.72
PTCH1-210ENST00000468211 TERB1Q8NA31 727 aa25.8■■□□□ 1.72
PTCH1-210ENST00000468211 HMGB4Q8WW32 186 aa25.8■■□□□ 1.72
PTCH1-210ENST00000468211 P2RY11Q96G91 374 aa25.8■■□□□ 1.72
PTCH1-210ENST00000468211 MBD1Q9UIS9 605 aaPredicted RBP25.8■■□□□ 1.72
PTCH1-210ENST00000468211 PCDHA5Q9Y5H7 936 aa25.8■■□□□ 1.72
PTCH1-210ENST00000468211 PI4KAP42356 2102 aa25.79■■□□□ 1.72
PTCH1-210ENST00000468211 TCRBV21S2A2A0A5A6 115 aa25.79■■□□□ 1.72
PTCH1-210ENST00000468211 PATE3B3GLJ2 98 aa25.79■■□□□ 1.72
PTCH1-210ENST00000468211 GTF2H1P32780 548 aa25.79■■□□□ 1.72
PTCH1-210ENST00000468211 RNF43Q68DV7 783 aa25.79■■□□□ 1.72
PTCH1-210ENST00000468211 TPGS1Q6ZTW0 290 aa25.79■■□□□ 1.72
PTCH1-210ENST00000468211 C11orf74Q86VG3 221 aa25.79■■□□□ 1.72
PTCH1-210ENST00000468211 ZNF513Q8N8E2 541 aaPredicted RBP25.79■■□□□ 1.72
PTCH1-210ENST00000468211 TATDN2Q93075 761 aa25.79■■□□□ 1.72
PTCH1-210ENST00000468211 POLMQ9NP87 494 aaPredicted RBP25.79■■□□□ 1.72
PTCH1-210ENST00000468211 DNAJC17Q9NVM6 304 aaKnown RBP25.79■■□□□ 1.72
PTCH1-210ENST00000468211 CIZ1Q9ULV3 898 aaPredicted RBP25.79■■□□□ 1.72
PTCH1-210ENST00000468211 NEDD8-MDP1E9PL57 170 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 TRIM21P19474 475 aaKnown RBP25.78■■□□□ 1.72
PTCH1-210ENST00000468211 WASP42768 502 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 PRCPP42785 496 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 DHPSP49366 369 aaPredicted RBP25.78■■□□□ 1.72
PTCH1-210ENST00000468211 C10orf120Q5SQS8 335 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 CCDC186Q7Z3E2 898 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 FMR1NBQ8N0W7 255 aaPredicted RBP25.78■■□□□ 1.72
PTCH1-210ENST00000468211 SLC4A11Q8NBS3 891 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 CCDC150Q8NCX0 1101 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 DDX1Q92499 740 aaKnown RBP25.78■■□□□ 1.72
PTCH1-210ENST00000468211 HEXIM2Q96MH2 286 aaKnown RBP25.78■■□□□ 1.72
PTCH1-210ENST00000468211 ACOX2Q99424 681 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 EDEM2Q9BV94 578 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 BBS2Q9BXC9 721 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 CISHQ9NSE2 258 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 BCCIPQ9P287 314 aaKnown RBP eCLIP25.78■■□□□ 1.72
PTCH1-210ENST00000468211 NAGPAQ9UK23 515 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 USP3Q9Y6I4 520 aa25.78■■□□□ 1.72
PTCH1-210ENST00000468211 MAP1BP46821 2468 aaKnown RBP25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms