RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 OTOL1A6NHN0 477 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 KCNJ18B7U540 433 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 TK2O00142 265 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 PRAMEF12O95522 483 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 PRB1P04280 392 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 ATF6P18850 670 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 BCKDHBP21953 392 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 WARSP23381 471 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 GABRR2P28476 465 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 PCSK1P29120 753 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 CDC25CP30307 473 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 KCNJ12Q14500 433 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 TAF12Q16514 161 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 MAN2A1Q16706 1144 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 HSP90AA4PQ58FG1 418 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 CDKAL1Q5VV42 579 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 SPOPLQ6IQ16 392 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 CCNI2Q6ZMN8 369 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 OSTM1Q86WC4 334 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 SYT12Q8IV01 421 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 HDDC3Q8N4P3 179 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 AOPEPQ8N6M6 819 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 MDM1Q8TC05 714 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 ADAMTS14Q8WXS8 1223 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 EXOC4Q96A65 974 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 ELMO3Q96BJ8 720 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 TPSD1Q9BZJ3 242 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 TASP1Q9H6P5 420 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 SMYD3Q9H7B4 428 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 APOBEC3GQ9HC16 384 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 ABCB6Q9NP58 842 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 TMEM74BQ9NUR3 256 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 ABI2Q9NYB9 513 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 MYH10P35580 1976 aa12.63□□□□□ -0.39
SQSTM1-206ENST00000466342 TNFRSF10BO14763 440 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 EEF1GP26641 437 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 ASPAP45381 313 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 ZNF165P49910 485 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 RPL10AP62906 217 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 CETN1Q12798 172 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 NCAPHQ15003 741 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 TCP11X2Q5H9J9 407 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 INTS6LQ5JSJ4 861 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 SCARA5Q6ZMJ2 495 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 RASSF3Q86WH2 238 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 TSTD1Q8NFU3 115 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 GIPC2Q8TF65 315 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 FAXDC2Q96IV6 333 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 GCNAQ96QF7 691 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 P2RY13Q9BPV8 354 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 LPIN3Q9BQK8 851 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 MRPL45Q9BRJ2 306 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 TUBGCP2Q9BSJ2 902 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 NIF3L1Q9GZT8 377 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 EBF3Q9H4W6 596 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 IL21Q9HBE4 155 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.62□□□□□ -0.391e-6■■■■□ 20.1
SQSTM1-206ENST00000466342 TMLHEQ9NVH6 421 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 FANCLQ9NW38 375 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 MBD1Q9UIS9 605 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 GTF3C4Q9UKN8 822 aa12.62□□□□□ -0.39
SQSTM1-206ENST00000466342 APC2O95996 2303 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 HCRTO43612 131 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 CSH1P0DML2 217 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 CSH2P0DML3 217 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 PRKCSHP14314 528 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 PLA2G2AP14555 144 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 HMGA1P17096 107 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 ACAT1P24752 427 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 DPP6P42658 865 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 ATXN3P54252 364 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 CDH8P55286 799 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 TRIP6Q15654 476 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 CFAP221Q4G0U5 840 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 MIIPQ5JXC2 388 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 TRIM68Q6AZZ1 485 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 FAM171BQ6P995 826 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 DHX40Q8IX18 779 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 OR6B3Q8NGW1 331 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 LMO3Q8TAP4 145 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 FUBP3Q96I24 572 aaKnown RBP eCLIP12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 UBL7Q96S82 380 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 PKMYT1Q99640 499 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 SDCBP2Q9H190 292 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 SNX25Q9H3E2 840 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 CYP3A43Q9HB55 503 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 DKK4Q9UBT3 224 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 CDH9Q9ULB4 789 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 NME7Q9Y5B8 376 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 OBSL1O75147 1896 aa12.61□□□□□ -0.39
SQSTM1-206ENST00000466342 PCDH15Q96QU1 1955 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 GTPBP10A4D1E9 387 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 SMTNL1A8MU46 457 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 OPHN1O60890 802 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 C1QL1O75973 258 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 F11P03951 625 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 ZNF18P17022 549 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 CYP2F1P24903 491 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 LMO2P25791 158 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 DDX6P26196 483 aaKnown RBP eCLIP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms