RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 FAAP100Q0VG06 881 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 PTK7Q13308 1070 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 SEPT7Q16181 437 aaKnown RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 CCL15Q16663 113 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ZNF618Q5T7W0 954 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 C9orf57Q5W0N0 161 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ASRGL1Q7L266 308 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 OTOAQ7RTW8 1153 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 SESTD1Q86VW0 696 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 CEP57Q86XR8 500 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ZNF276Q8N554 614 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 CCDC110Q8TBZ0 833 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 GTF3C2Q8WUA4 911 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 TEKT4Q8WW24 435 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 BRI3BPQ8WY22 251 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ERP27Q96DN0 273 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 L3MBTL3Q96JM7 780 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 SERAC1Q96JX3 654 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 GCOM2Q9BZD3 368 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 NOD2Q9HC29 1040 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 PAK5Q9P286 719 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 MDM4O15151 490 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 DYNC1LI2O43237 492 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 MT-ND3P03897 115 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 APRTP07741 180 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 HOXD8P13378 290 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 LCP1P13796 627 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 CYP2F1P24903 491 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ZNF200P98182 395 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 GBE1Q04446 702 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 SLC10A2Q12908 348 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 PRAMEF19Q5SWL8 479 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ALKAL1Q6UXT8 129 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 CAND1Q86VP6 1230 aaKnown RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 BEST2Q8NFU1 509 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 NPLOC4Q8TAT6 608 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 SLC44A1Q8WWI5 657 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 RTP4Q96DX8 246 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 TBCBQ99426 244 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 TINF2Q9BSI4 451 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 TRIM6Q9C030 488 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 DHX35Q9H5Z1 703 aaKnown RBP9.3□□□□□ -0.92
SYNE1-217ENST00000466159 NRDE2Q9H7Z3 1164 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 YY1AP1Q9H869 796 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ETNK1Q9HBU6 452 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ARHGEF3Q9NR81 526 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ETNK2Q9NVF9 386 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 STK38LQ9Y2H1 464 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 DERAQ9Y315 318 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 IKBKGQ9Y6K9 419 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 USH1CQ9Y6N9 552 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 BCLAF3A2AJT9 711 aaKnown RBP9.29□□□□□ -0.92
SYNE1-217ENST00000466159 A8MUI8 341 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 SPTLC1O15269 473 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 UNC5CO95185 931 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 C1QAP02745 245 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 INHBAP08476 426 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 SETSIPP0DME0 302 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 TSHRP16473 764 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 IBSPP21815 317 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-217ENST00000466159 L1CAMP32004 1257 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 CCDC15Q0P6D6 951 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 GRB14Q14449 540 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 HIC1Q14526 733 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 E2F5Q15329 346 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 NOTUMQ6P988 496 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 LRRC52Q8N7C0 313 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 KBTBD7Q8WVZ9 684 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 C10orf82Q8WW14 230 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 PTPRN2Q92932 1015 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 TBC1D31Q96DN5 1066 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 LRRC37BQ96QE4 947 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 TRIM56Q9BRZ2 755 aaKnown RBP9.29□□□□□ -0.92
SYNE1-217ENST00000466159 ZNF670Q9BS34 389 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 ABHD16BQ9H3Z7 469 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 GOLGA2P5Q9HBQ8 144 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 SPON1Q9HCB6 807 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 NR2E3Q9Y5X4 410 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 TRIP12Q14669 1992 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-217ENST00000466159 RALGAPA2Q2PPJ7 1873 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 IQANK1A0A1B0GTG1 560 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 CXorf49A8MYA2 514 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-217ENST00000466159 TM9SF1O15321 606 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 LPXNO60711 386 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 METTL18O95568 372 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 SMIM10L2AP0DMW4 78 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 SMIM10L2BP0DMW5 78 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 PYGBP11216 843 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 CCNB1P14635 433 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 OVGP1Q12889 678 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 SETDB1Q15047 1291 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 PLEKHG4Q58EX7 1191 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 ARHGAP17Q68EM7 881 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 SH2D5Q6ZV89 423 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 UNC93AQ86WB7 457 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 CTAGE3PQ8IX95 158 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 CCDC185Q8N715 623 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 STK32AQ8WU08 396 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 TMEM40Q8WWA1 233 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 NDRG1Q92597 394 aaKnown RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms