RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SRRM3A6NNA2 597 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 DNM1LO00429 736 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 CD48P09326 243 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 SKIP12755 728 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 GRK4P32298 578 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 NUMBP49757 651 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 DCAF4L1Q3SXM0 396 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 BBS12Q6ZW61 710 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 RNF180Q86T96 592 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 CNPY4Q8N129 248 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 ADAM32Q8TC27 787 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 ZNF75CPQ92670 426 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 PRCCQ92733 491 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 FRMD8P1Q9BZ68 369 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 TJP2Q9UDY2 1190 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 ITGA11Q9UKX5 1188 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 DRG1Q9Y295 367 aaKnown RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 MRPL42Q9Y6G3 142 aaKnown RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 PTPRJQ12913 1337 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 LOC100653049A0A140TA62 436 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 H0YGN5 161 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 KIF3CO14782 793 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 AVILO75366 819 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 KRT34O76011 436 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 MYL2P10916 166 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 CCDC130P13994 396 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 EPHB2P29323 1055 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 ACADSBP45954 432 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 CXCL17Q6UXB2 119 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 FAM183BPQ6ZVS7 135 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 SLC2A14Q8TDB8 520 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 SPOCK2Q92563 424 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 THTPAQ9BU02 230 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 VCX3BQ9H321 246 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 CREBZFQ9NS37 354 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 TRIM33Q9UPN9 1127 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 NFS1Q9Y697 457 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 MYO7AQ13402 2215 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 KCNK1O00180 336 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 MAP3K7O43318 606 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 ANP32DO95626 131 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 BCAT1P54687 386 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 EFTUD2Q15029 972 aaKnown RBP eCLIP12.05□□□□□ -0.48
NPHP4-204ENST00000460696 PDK1Q15118 436 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 SV2CQ496J9 727 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 TMEM192Q8IY95 271 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 CYP4X1Q8N118 509 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 C1orf127Q8N9H9 656 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 EPAS1Q99814 870 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 C12orf65Q9H3J6 166 aaKnown RBP12.05□□□□□ -0.48
NPHP4-204ENST00000460696 PMM2O15305 246 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 ATP6V1G2O95670 118 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 FAM200BP0CF97 657 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 CCND1P24385 295 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 ECHS1P30084 290 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 TAF5Q15542 800 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 CST9Q5W186 159 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 KCNT2Q6UVM3 1135 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 PLPPR4Q7Z2D5 763 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 IFNL1Q8IU54 200 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 KAT2BQ92831 832 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 GBP5Q96PP8 586 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 B3GNT5Q9BYG0 378 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 XAB2Q9HCS7 855 aaKnown RBP12.05□□□□□ -0.48
NPHP4-204ENST00000460696 STARD7Q9NQZ5 370 aa12.05□□□□□ -0.48
NPHP4-204ENST00000460696 CPSF3Q9UKF6 684 aaKnown RBP12.05□□□□□ -0.48
NPHP4-204ENST00000460696 NEMP1O14524 444 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 RGS20O76081 388 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 RECQL4O94761 1208 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 ERBB2P04626 1255 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 ITGAVP06756 1048 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 CYP1B1Q16678 543 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 CES3Q6UWW8 571 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 GPR142Q7Z601 462 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 GLIS1Q8NBF1 620 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 MTO1Q9Y2Z2 717 aaKnown RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 MAP1BP46821 2468 aaKnown RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 ZC3H4Q9UPT8 1303 aaKnown RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 CYB561D2O14569 222 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 AP1G2O75843 785 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 MAP3K7CLP57077 242 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 CDC42EP1Q00587 391 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 ADIGQ0VDE8 80 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 MTFR1Q15390 333 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 TRABD2AQ86V40 505 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 ADGRF2Q8IZF7 708 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 C12orf50Q8NA57 414 aaPredicted RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 OR6P1Q8NGX9 317 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 ZNF296Q8WUU4 475 aaPredicted RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 DDX1Q92499 740 aaKnown RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 L3MBTL3Q96JM7 780 aaPredicted RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 MYLK2Q9H1R3 596 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 CCDC68Q9H2F9 335 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 XPNPEP3Q9NQH7 507 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 UBP1Q9NZI7 540 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 TTLL13PA6NNM8 815 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 TRUB2O95900 331 aaKnown RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 POLBP06746 335 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 RAG1P15918 1043 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 CDKN2BP42772 138 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms