RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PTAR1Q7Z6K3 402 aaPredicted RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 ZBTB46Q86UZ6 589 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 SLC26A11Q86WA9 606 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 TTC13Q8NBP0 860 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 ADAM32Q8TC27 787 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 FAF2Q96CS3 445 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 COPS7BQ9H9Q2 264 aaPredicted RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 SIRPGQ9P1W8 387 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 DNAJB4Q9UDY4 337 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 AP4B1Q9Y6B7 739 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 ASTN2O75129 1339 aaPredicted RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 HMX2A2RU54 273 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 E9PBE3 544 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 XPO1O14980 1071 aaKnown RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 KLHL41O60662 606 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 VIL1P09327 827 aaKnown RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 PSMA2P25787 234 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 PSMD7P51665 324 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 CCR3P51677 355 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 STAT2P52630 851 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 CBX3Q13185 183 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 FASTKD1Q53R41 847 aaKnown RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 AAGABQ6PD74 315 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 MXRA8Q9BRK3 442 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 RBM38Q9H0Z9 239 aaKnown RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 PPCSQ9HAB8 311 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 RAB6BQ9NRW1 208 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 PPME1Q9Y570 386 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 TEX264Q9Y6I9 313 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 DHX15O43143 795 aaKnown RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 SNRPAP09012 282 aaKnown RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 CRKP46108 304 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 EML3Q32P44 896 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 KCTD21Q4G0X4 260 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 DARS2Q6PI48 645 aaKnown RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 PHF13Q86YI8 300 aaPredicted RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 ADGRF2Q8IZF7 708 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 GPD1LQ8N335 351 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 MPP5Q8N3R9 675 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 OR5B17Q8NGF7 314 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 PGBD4Q96DM1 585 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 CATSPER2Q96P56 530 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 DBNDD1Q9H9R9 158 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 SLC9A2Q9UBY0 812 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 NR2E3Q9Y5X4 410 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 COL24A1Q17RW2 1714 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 TMX2-CTNND1H3BSU7 103 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 TBC1D12O60347 775 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 CCNT2O60583 730 aaKnown RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 BPGMP07738 259 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 MMP8P22894 467 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 PKNOX1P55347 436 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 DMP1Q13316 513 aaPredicted RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 TMEM259Q4ZIN3 620 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 KLC3Q6P597 504 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 C15orf52Q6ZUT6 534 aaKnown RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 PCGF5Q86SE9 256 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 MAP4K3Q8IVH8 894 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 SPATA18Q8TC71 538 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 USP13Q92995 863 aaPredicted RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 TEKT1Q969V4 418 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 ZC3H7BQ9UGR2 993 aaKnown RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 DOLKQ9UPQ8 538 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 TTC36A6NLP5 189 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 AIM2O14862 343 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 KLF11O14901 512 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 PMM2O15305 246 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 CFLARO15519 480 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 C1QAP02745 245 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 AOC1P19801 751 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 TCN1P20061 433 aaPredicted RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 VARSP26640 1264 aaKnown RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 YWHAZP63104 245 aaKnown RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 PPIDQ08752 370 aaKnown RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 CYLC2Q14093 348 aaPredicted RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 ANKDD1AQ495B1 522 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 PPM1LQ5SGD2 360 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 PGM2L1Q6PCE3 622 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 PGLYRP2Q96PD5 576 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 SIKE1Q9BRV8 207 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 YIPF2Q9BWQ6 316 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 RNPEPQ9H4A4 650 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 FZD1Q9UP38 647 aa12.13□□□□□ -0.47
CPSF3-202ENST00000460593 APOBEC2Q9Y235 224 aaKnown RBP12.13□□□□□ -0.47
CPSF3-202ENST00000460593 NFIBO00712 420 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 ADCY6O43306 1168 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 SNNO75324 88 aaPredicted RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 ZNF189O75820 626 aaPredicted RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 KRT37O76014 449 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 CCDC166P0CW27 439 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 MYCLP12524 364 aaPredicted RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 EIF2AK2P19525 551 aaKnown RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 ADORA2AP29274 412 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 HSPA1LP34931 641 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 GRIA1P42261 906 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 SH2D4BQ5SQS7 431 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 SH3PXD2AQ5TCZ1 1133 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 PDPK2PQ6A1A2 396 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 ADGRG6Q86SQ4 1221 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 TMC2Q8TDI7 906 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms