RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 HECTD3Q5T447 861 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 HFE2Q6ZVN8 426 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 BEND5Q7L4P6 421 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 ARCQ7LC44 396 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 ZNF276Q8N554 614 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 RNF139Q8WU17 664 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 KHSRPQ92945 711 aaKnown RBP eCLIP16.53■□□□□ 0.24
USP40-206ENST00000443711 TCEAL4Q96EI5 215 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 PIWIL1Q96J94 861 aaKnown RBP16.53■□□□□ 0.24
USP40-206ENST00000443711 ZNF830Q96NB3 372 aaPredicted RBP16.53■□□□□ 0.24
USP40-206ENST00000443711 CDK5RAP1Q96SZ6 601 aaKnown RBP16.53■□□□□ 0.24
USP40-206ENST00000443711 PACSIN1Q9BY11 444 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 POPDC2Q9HBU9 364 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 METTL5Q9NRN9 209 aaKnown RBP16.53■□□□□ 0.24
USP40-206ENST00000443711 ZMYM5Q9UJ78 669 aa16.53■□□□□ 0.24
USP40-206ENST00000443711 USP15Q9Y4E8 981 aaPredicted RBP16.53■□□□□ 0.24
USP40-206ENST00000443711 CAPN9O14815 690 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 ATMINO43313 823 aaPredicted RBP16.52■□□□□ 0.24
USP40-206ENST00000443711 MOSPD3O75425 235 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 TADA3O75528 432 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 GRAP2O75791 330 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 RARGP13631 454 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 GJA1P17302 382 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 PFKLP17858 780 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 DDX6P26196 483 aaKnown RBP eCLIP16.52■□□□□ 0.24
USP40-206ENST00000443711 PGFP49763 221 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 TUBP50607 506 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 CYP4F8P98187 520 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 SMAD4Q13485 552 aaKnown RBP16.52■□□□□ 0.24
USP40-206ENST00000443711 MAMLD1Q13495 774 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 TEAD2Q15562 447 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 GPR158Q5T848 1215 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 DCUN1D2Q6PH85 259 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 RSRC2Q7L4I2 434 aaKnown RBP16.52■□□□□ 0.24
USP40-206ENST00000443711 KIAA1328Q86T90 577 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 TADA2BQ86TJ2 420 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 ACRBPQ8NEB7 543 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 ITFG1Q8TB96 612 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 EDEM1Q92611 657 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 SLC2A13Q96QE2 648 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 DESI2Q9BSY9 194 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 KCNF1Q9H3M0 494 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 TASP1Q9H6P5 420 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 OLA1Q9NTK5 396 aaKnown RBP16.52■□□□□ 0.24
USP40-206ENST00000443711 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.52■□□□□ 0.24
USP40-206ENST00000443711 OSER1Q9NX31 292 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 CDH22Q9UJ99 828 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 TMEM59LQ9UK28 342 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 REXO2Q9Y3B8 237 aaKnown RBP16.52■□□□□ 0.24
USP40-206ENST00000443711 ADGRG1Q9Y653 693 aa16.52■□□□□ 0.24
USP40-206ENST00000443711 CDH23Q9H251 3354 aa16.52■□□□□ 0.23
USP40-206ENST00000443711 TLR5O60602 858 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 DAB1O75553 588 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 FYNP06241 537 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 NCAM1P13591 858 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 NOS2P35228 1153 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 ATP5C1P36542 298 aaKnown RBP16.51■□□□□ 0.23
USP40-206ENST00000443711 MATKP42679 507 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 VAV2P52735 878 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 CBX2Q14781 532 aaPredicted RBP16.51■□□□□ 0.23
USP40-206ENST00000443711 LEXMQ3ZCV2 418 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 PPP1R15BQ5SWA1 713 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 TXNDC8Q6A555 127 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 DEFB106AQ8N104 65 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 ING5Q8WYH8 240 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 SUSD6Q92537 303 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 ARHGEF26Q96DR7 871 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 CCSER2Q9H7U1 834 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 TRPC7Q9HCX4 862 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 RRN3Q9NYV6 651 aa16.51■□□□□ 0.23
USP40-206ENST00000443711 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.51■□□□□ 0.23
USP40-206ENST00000443711 C2orf78A6NCI8 922 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 GRXCR2A6NFK2 248 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 MBTPS2O43462 519 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 GJB6O95452 261 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 OAS1P00973 400 aaKnown RBP16.5■□□□□ 0.23
USP40-206ENST00000443711 CCDC175P0C221 793 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 CEBPBP17676 345 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 HDCP19113 662 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 RFC1P35251 1148 aaPredicted RBP16.5■□□□□ 0.23
USP40-206ENST00000443711 DCAF6Q58WW2 860 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 C10orf120Q5SQS8 335 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 KLHDC10Q6PID8 442 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 RHOT2Q8IXI1 618 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 MAB21L3Q8N8X9 362 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 JOSD2Q8TAC2 188 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 MCEEQ96PE7 176 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 DDX23Q9BUQ8 820 aaKnown RBP16.5■□□□□ 0.23
USP40-206ENST00000443711 NUP85Q9BW27 656 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 SLC46A2Q9BY10 475 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 NACA2Q9H009 215 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 POMKQ9H5K3 350 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 SLITRK6Q9H5Y7 841 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.5■□□□□ 0.23
USP40-206ENST00000443711 CTTNBP2NLQ9P2B4 639 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 UVRAGQ9P2Y5 699 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 NAALADL1Q9UQQ1 740 aa16.5■□□□□ 0.23
USP40-206ENST00000443711 TRAV19A0A0A6YYK7 116 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 TMEM191CA6NGB0 347 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 NRG2O14511 850 aaPredicted RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms