RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SUMO4Q6EEV6 95 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 ABLIM2Q6H8Q1 611 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 NAPRTQ6XQN6 538 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 MORC1Q86VD1 984 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 SAMD3Q8N6K7 520 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 C11orf44Q8N8P7 122 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 TERB1Q8NA31 727 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 SUN3Q8TAQ9 357 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 ABHD5Q8WTS1 349 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 SNX18Q96RF0 628 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 PCDHAC1Q9H158 963 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 NECTIN3Q9NQS3 549 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 SNX15Q9NRS6 342 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 CEP83Q9Y592 693 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 PCDHGB2Q9Y5G2 931 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 AOX1Q06278 1338 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 KAT6AQ92794 2004 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 PDE8BO95263 885 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 ABCB4P21439 1286 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 FPR3P25089 353 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 SERPINB3P29508 390 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 PROK1P58294 105 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 GPS1Q13098 491 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 ACOX1Q15067 660 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 MAPKAPK3Q16644 382 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 RAP1GAP2Q684P5 730 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 XRRA1Q6P2D8 792 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 KIRREL2Q6UWL6 708 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 TRIM72Q6ZMU5 477 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 DAZAP1Q96EP5 407 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 WDR24Q96S15 920 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 MACROD1Q9BQ69 325 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 STK33Q9BYT3 514 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 MYH16Q9H6N6 1097 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 SH3BP4Q9P0V3 963 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 MGAT4CQ9UBM8 478 aa6.66□□□□□ -1.34
CCDC88A-206ENST00000430086 MCM5P33992 734 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 DIO1P49895 249 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 EIF4A1P60842 406 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 LMAN2Q12907 356 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 MTAPQ13126 283 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 ATP1A4Q13733 1029 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 BRD3Q15059 726 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 TMEM63BQ5T3F8 832 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 FBXO38Q6PIJ6 1188 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 ZNF788Q6ZQV5 615 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 PTF1AQ7RTS3 328 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 FSTL5Q8N475 847 aaPredicted RBP6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 NGDNQ8NEJ9 315 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 ZNF764Q96H86 408 aaPredicted RBP6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 CIPCQ9C0C6 399 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.65□□□□□ -1.343e-6■□□□□ 9.6
CCDC88A-206ENST00000430086 ARFGAP3Q9NP61 516 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 SLC52A1Q9NWF4 448 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 TFCP2L1Q9NZI6 479 aa6.65□□□□□ -1.34
CCDC88A-206ENST00000430086 CBFA2T3O75081 653 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 WDR47O94967 919 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 SETSIPP0DME0 302 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 TMEM225BP0DP42 221 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 ADRA1DP25100 572 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 PPM1AP35813 382 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 TFF2Q03403 129 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 NSUN2Q08J23 767 aaKnown RBP eCLIP6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 ARL6IP4Q66PJ3 421 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 BCDIN3DQ7Z5W3 292 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 LINC01465Q8N7H1 131 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 PNPLA1Q8N8W4 532 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 HASPINQ8TF76 798 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 NTN5Q8WTR8 489 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 TMEM41AQ96HV5 264 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 VPS50Q96JG6 964 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 TMEM8AQ9HCN3 771 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 GAR1Q9NY12 217 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 PTGFRNQ9P2B2 879 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 LPAR3Q9UBY5 353 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 CA14Q9ULX7 337 aa6.64□□□□□ -1.35
CCDC88A-206ENST00000430086 PODXLO00592 558 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 EXOC3O60645 756 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 PECAM1P16284 738 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 FBLP22087 321 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 RENBPP51606 427 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 RAB30Q15771 203 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 PROSER3Q2NL68 480 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 TMTC4Q5T4D3 741 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 GORABQ5T7V8 394 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 TLDC1Q6P9B6 456 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 SYTL1Q8IYJ3 562 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 SEMA6DQ8NFY4 1073 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 MMS19Q96T76 1030 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 TTLL2Q9BWV7 592 aa6.63□□□□□ -1.35
CCDC88A-206ENST00000430086 ADAMTS3O15072 1205 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 RBMXL2O75526 392 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 CD38P28907 300 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 TECP42680 631 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 DGKQP52824 942 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 DEUP1Q05D60 604 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 MORC3Q14149 939 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 C4orf46Q504U0 113 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 GRHL2Q6ISB3 625 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms