RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 SUSD6Q92537 303 aa11.05□□□□□ -0.64
TCOF1-204ENST00000427724 PBXIP1Q96AQ6 731 aa11.05□□□□□ -0.64
TCOF1-204ENST00000427724 TMEM176AQ96HP8 235 aa11.05□□□□□ -0.64
TCOF1-204ENST00000427724 C9orf72Q96LT7 481 aa11.05□□□□□ -0.64
TCOF1-204ENST00000427724 CARD9Q9H257 536 aa11.05□□□□□ -0.64
TCOF1-204ENST00000427724 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.05□□□□□ -0.64
TCOF1-204ENST00000427724 ZNF536O15090 1300 aa11.05□□□□□ -0.64
TCOF1-204ENST00000427724 F8VP50 259 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 DDX3XO00571 662 aaKnown RBP eCLIP11.04□□□□□ -0.649e-17■■□□□ 11.8
TCOF1-204ENST00000427724 TJP3O95049 919 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 HSPA9P38646 679 aaKnown RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 GJA9P57773 515 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 PCSK7Q16549 785 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 FUT10Q6P4F1 479 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 KCNT2Q6UVM3 1135 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 RNF168Q8IYW5 571 aaPredicted RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 ST13P5Q8NFI4 369 aaPredicted RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 DCUN1D1Q96GG9 259 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 RBM41Q96IZ5 413 aaKnown RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 VCX3BQ9H321 246 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 BCAS3Q9H6U6 928 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 VCX3AQ9NNX9 186 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 TXLNGQ9NUQ3 528 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 PCDHGC5Q9Y5F6 944 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 TRAV19A0A0A6YYK7 116 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 KPNA3O00505 521 aaPredicted RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 NCAM2O15394 837 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 DNAJC6O75061 913 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 FECHP22830 423 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 ICAM3P32942 547 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 TNFSF9P41273 254 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 MTM1Q13496 603 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 DBN1Q16643 649 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 ADAM32Q8TC27 787 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 SLC35C1Q96A29 364 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 SMARCD1Q96GM5 515 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 NUDCD1Q96RS6 583 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 UBA6A0AVT1 1052 aaPredicted RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 RHOCP08134 193 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 NRIP1P48552 1158 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 ZNF844Q08AG5 666 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 KYNUQ16719 465 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 SIAH1Q8IUQ4 282 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 PDCD7Q8N8D1 485 aaKnown RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 SLC20A1Q8WUM9 679 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 FAF2Q96CS3 445 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 CFAP57Q96MR6 1250 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 TGS1Q96RS0 853 aaKnown RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 R3HDMLQ9H3Y0 253 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 OLFML3Q9NRN5 406 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 METTL5Q9NRN9 209 aaKnown RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 SAGE1Q9NXZ1 904 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 ADAM28Q9UKQ2 775 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 KIAA1257Q9ULG3 409 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 FRMPD4Q14CM0 1322 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 F8VZ95 297 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 AGPSO00116 658 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 SLC9A3R1O14745 358 aaPredicted RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 SPAG7O75391 227 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 MAPK7Q13164 816 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 GTF2H3Q13889 308 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 PCBP1Q15365 356 aaKnown RBP eCLIP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 GPR158Q5T848 1215 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 C1orf186Q6ZWK4 172 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 EPS8L3Q8TE67 593 aaKnown RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 CATSPERBQ9H7T0 1116 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 NDFIP2Q9NV92 336 aa11.04□□□□□ -0.64
TCOF1-204ENST00000427724 BARX2Q9UMQ3 279 aaPredicted RBP11.04□□□□□ -0.64
TCOF1-204ENST00000427724 ARFGEF2Q9Y6D5 1785 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 ZNF862O60290 1169 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 AGTP01019 485 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 ATP5C1P36542 298 aaKnown RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 ADIGQ0VDE8 80 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 SMTNL2Q2TAL5 461 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 FNDC3BQ53EP0 1204 aaKnown RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 ANKRD20A8PQ5CZ79 823 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 HERC6Q8IVU3 1022 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 PYROXD1Q8WU10 500 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 EXT2Q93063 718 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 TATDN2Q93075 761 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 C18orf25Q96B23 403 aaPredicted RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 TIFAQ96CG3 184 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 HHIPL1Q96JK4 782 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 UROC1Q96N76 676 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 ACO2Q99798 780 aaKnown RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 HSD17B14Q9BPX1 270 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 PABPC3Q9H361 631 aaKnown RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 TMEM134Q9H6X4 195 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 CYP3A43Q9HB55 503 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 FGFR1OP2Q9NVK5 253 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 TMEM161AQ9NX61 479 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 Q9Y3F1 56 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 RTN3O95197 1032 aaPredicted RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 ATP6V1G2O95670 118 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 EPM2AIP1Q7L775 607 aaPredicted RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 LRRC34Q8IZ02 419 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 ARHGAP24Q8N264 748 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 EIF2AQ9BY44 585 aaKnown RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 FBXO10Q9UK96 956 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms